Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 5.1e-108 394.4 200 100.0
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 6.5e-79 297.7 201 78.1
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 7.9e-77 290.8 205 76.6
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 5.7e-67 258.1 196 71.4
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 1.4e-65 253.4 196 71.4
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 4.1e-65 251.9 202 69.3
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 7.0e-65 251.1 208 68.8
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 1.6e-64 250.0 205 69.8
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 1.6e-64 250.0 202 71.3
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 4.5e-64 248.4 202 69.8
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 1.3e-63 246.9 199 72.4
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 1.7e-63 246.5 206 69.9
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 5.0e-63 245.0 209 67.0
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 8.5e-63 244.2 204 69.6
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 8.5e-63 244.2 199 69.3
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 1.1e-62 243.8 203 67.5
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 1.5e-62 243.4 202 68.3
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 3.2e-62 242.3 198 68.2
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 5.5e-62 241.5 209 67.5
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 5.5e-62 241.5 200 68.5
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 9.4e-62 240.7 175 74.9
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 1.2e-61 240.4 200 65.0
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 2.7e-61 239.2 168 75.6
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 2.7e-61 239.2 206 65.5
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 3.6e-61 238.8 206 65.5
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 3.6e-61 238.8 206 65.5
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 4.7e-61 238.4 182 72.0
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 4.7e-61 238.4 207 66.7
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 1.0e-60 237.3 205 64.9
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 1.4e-60 236.9 199 66.8
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 2.3e-60 236.1 200 68.5
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 3.0e-60 235.7 165 72.7
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 3.0e-60 235.7 203 66.5
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 3.0e-60 235.7 201 65.2
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 4.0e-60 235.3 200 65.0
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 5.2e-60 235.0 203 65.5
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 5.2e-60 235.0 207 64.7
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 6.7e-60 234.6 202 65.8
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 8.8e-60 234.2 201 67.2
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.2e-59 233.8 200 66.0
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.2e-59 233.8 200 66.0
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 2.0e-59 233.0 199 63.8
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 2.0e-59 233.0 184 68.5
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 2.0e-59 233.0 199 64.8
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 2.6e-59 232.6 199 67.3
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 2.6e-59 232.6 173 72.8
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 2.6e-59 232.6 118 96.6
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 4.4e-59 231.9 198 64.1
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 5.7e-59 231.5 176 71.0
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 7.5e-59 231.1 202 62.9
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.7e-58 229.9 174 70.7
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.8e-58 229.2 174 70.1
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 3.7e-58 228.8 203 63.5
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 4.8e-58 228.4 200 64.5
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 6.3e-58 228.0 174 69.5
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 1.1e-57 227.3 165 72.7
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.4e-57 226.9 199 64.8
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 1.4e-57 226.9 205 63.4
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 1.8e-57 226.5 206 66.5
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 1.8e-57 226.5 181 68.5
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 2.4e-57 226.1 204 64.2
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 3.1e-57 225.7 165 72.7
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 3.1e-57 225.7 161 72.0
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 4.1e-57 225.3 182 67.0
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.1e-57 225.3 160 73.1
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 5.3e-57 224.9 175 69.7
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 7.0e-57 224.6 174 67.8
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 7.0e-57 224.6 204 62.7
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 7.0e-57 224.6 190 64.2
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.2e-56 223.8 159 73.0
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 2.0e-56 223.0 183 66.1
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 2.7e-56 222.6 207 65.2
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 3.5e-56 222.2 173 68.2
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 2.9e-55 219.2 174 69.0
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 3.8e-55 218.8 196 62.8
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 5.0e-55 218.4 163 74.2
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 8.5e-55 217.6 200 62.5
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 1.9e-54 216.5 208 59.1
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 1.9e-54 216.5 190 62.6
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 1.9e-54 216.5 168 67.9
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 3.2e-54 215.7 196 61.7
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 4.2e-54 215.3 139 77.7
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 7.2e-54 214.5 174 66.7
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 7.2e-54 214.5 174 66.7
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 9.4e-54 214.2 139 77.0
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 9.4e-54 214.2 139 77.0
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 1.6e-53 213.4 139 76.3
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 1.6e-53 213.4 139 76.3
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 3.6e-53 212.2 196 60.7
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 3.6e-53 212.2 202 60.4
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 4.7e-53 211.8 203 60.1
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 6.8e-52 208.0 193 57.5
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.3e-50 203.8 124 79.0
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 3.1e-49 199.1 159 68.6
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 2.0e-48 196.4 202 56.9
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.3e-47 193.7 197 55.8
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 1.1e-46 190.7 117 73.5
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 1.1e-46 190.7 131 74.8
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 5.5e-46 188.3 130 72.3
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 2.1e-45 186.4 114 76.3
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 2.8e-45 186.0 188 60.1
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 3.6e-45 185.7 112 79.5
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 2.0e-43 179.9 116 69.8
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 4.4e-43 178.7 139 68.3
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 4.4e-43 178.7 109 76.1
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 5.6e-38 161.8 120 62.5
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 9.2e-33 144.4 199 50.3
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 6.0e-32 141.7 196 48.5
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 6.6e-23 111.7 143 37.8
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 3.1e-20 102.8 128 41.4
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 2.1e-16 90.1 110 42.7
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 6.6e-15 85.1 45 86.7
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 9.5e-14 81.3 134 31.3


User provided reference genes

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