Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 6.3e-77 290.8 160 100.0
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 2.4e-52 209.1 163 77.9
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 2.5e-33 146.0 113 72.6
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 4.0e-31 138.7 155 56.1
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 1.5e-30 136.7 155 57.4
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 6.4e-29 131.3 121 66.1
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 8.4e-29 131.0 76 88.2
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 7.1e-28 127.9 176 48.9
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 2.7e-27 125.9 160 56.2
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 2.7e-27 125.9 89 73.0
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 6.0e-27 124.8 160 50.0
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 1.0e-26 124.0 86 73.3
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 1.0e-26 124.0 86 73.3
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 2.3e-26 122.9 172 47.7
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 5.1e-26 121.7 122 57.4
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 6.7e-26 121.3 162 48.8
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.5e-25 120.2 83 72.3
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 1.9e-25 119.8 109 62.4
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.9e-25 119.8 126 56.3
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 1.9e-25 119.8 89 68.5
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 1.9e-25 119.8 122 54.1
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 2.5e-25 119.4 126 56.3
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 2.5e-25 119.4 86 69.8
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 3.3e-25 119.0 87 67.8
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 4.3e-25 118.6 84 70.2
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 5.6e-25 118.2 122 54.9
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 5.6e-25 118.2 148 50.0
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 9.6e-25 117.5 85 69.4
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 1.3e-24 117.1 85 70.6
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 1.3e-24 117.1 87 71.3
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 1.6e-24 116.7 166 45.8
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 2.1e-24 116.3 148 49.3
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 2.1e-24 116.3 83 72.3
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 2.8e-24 115.9 167 46.1
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 2.8e-24 115.9 167 45.5
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 2.8e-24 115.9 83 71.1
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 3.7e-24 115.5 107 57.9
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 3.7e-24 115.5 158 47.5
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 3.7e-24 115.5 83 68.7
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 8.1e-24 114.4 161 47.8
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 8.1e-24 114.4 84 69.0
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 8.1e-24 114.4 83 69.9
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 8.1e-24 114.4 167 52.1
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 1.1e-23 114.0 86 72.1
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 1.4e-23 113.6 164 48.2
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 2.4e-23 112.8 87 72.4
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 2.4e-23 112.8 157 45.2
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.4e-23 112.8 150 46.0
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 5.3e-23 111.7 163 47.9
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 6.9e-23 111.3 158 48.7
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 6.9e-23 111.3 86 64.0
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 6.9e-23 111.3 82 70.7
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 9.0e-23 110.9 158 46.8
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 1.2e-22 110.5 87 63.2
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 1.5e-22 110.2 91 61.5
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 1.5e-22 110.2 164 43.3
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 1.5e-22 110.2 164 43.3
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 1.5e-22 110.2 164 43.3
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 2.0e-22 109.8 150 46.0
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 2.6e-22 109.4 167 46.7
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 2.6e-22 109.4 158 47.5
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 2.6e-22 109.4 69 78.3
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 2.6e-22 109.4 143 49.0
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 4.5e-22 108.6 118 51.7
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 5.8e-22 108.2 138 48.6
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 5.8e-22 108.2 154 53.9
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 7.6e-22 107.8 73 75.3
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 1.3e-21 107.1 111 55.0
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 1.3e-21 107.1 111 55.0
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 1.3e-21 107.1 111 55.0
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 3.8e-21 105.5 122 49.2
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 4.9e-21 105.1 89 65.2
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 4.9e-21 105.1 85 62.4
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 6.4e-21 104.8 160 43.1
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 6.4e-21 104.8 90 64.4
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 8.4e-21 104.4 139 45.3
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 8.4e-21 104.4 127 49.6
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 8.4e-21 104.4 83 62.7
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 1.1e-20 104.0 63 77.8
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 1.1e-20 104.0 154 43.5
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 1.4e-20 103.6 85 61.2
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 1.9e-20 103.2 89 62.9
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 1.9e-20 103.2 159 44.7
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 2.5e-20 102.8 157 45.2
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 3.2e-20 102.4 80 65.0
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 3.2e-20 102.4 127 48.0
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 4.2e-20 102.1 116 50.9
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 5.5e-20 101.7 151 45.0
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 5.5e-20 101.7 151 45.0
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 1.6e-19 100.1 184 39.7
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 4.6e-19 98.6 71 69.0
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 4.6e-19 98.6 86 59.3
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 1.0e-18 97.4 162 40.1
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 1.8e-18 96.7 65 72.3
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 5.1e-18 95.1 87 56.3
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 8.7e-18 94.4 175 41.1
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 1.1e-17 94.0 66 68.2
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 2.5e-17 92.8 75 64.0
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 2.4e-15 86.3 59 69.5
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 1.3e-13 80.5 81 50.6
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 4.9e-13 78.6 110 41.8
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 7.1e-12 74.7 128 39.8
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 2.1e-11 73.2 76 52.6
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 1.8e-10 70.1 73 53.4
CBR_g18894 Chara braunii HOM05D007425 ORTHO05D009334 1.6e-08 63.5 105 38.1
CDE07G0184 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 4.1e-07 58.9 42 69.0


User provided reference genes

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