Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g036320 Medicago truncatula HOM05D000147 ORTHO05D004093 2.1e-79 298.9 146 100.0
TPR.G26136 Trifolium pratense HOM05D000147 ORTHO05D001254 1.4e-25 120.2 92 58.7
TPR.G15289 Trifolium pratense HOM05D000147 ORTHO05D004093 1.8e-25 119.8 126 48.4
TPR.G12197 Trifolium pratense HOM05D000147 ORTHO05D004093 3.3e-24 115.5 93 58.1
Medtr6g453270 Medicago truncatula HOM05D000147 ORTHO05D004093 8.2e-23 110.9 109 45.0
Medtr5g049680 Medicago truncatula HOM05D000147 ORTHO05D004093 2.4e-22 109.4 90 53.3
TPR.G397 Trifolium pratense HOM05D000147 ORTHO05D004093 1.2e-21 107.1 92 52.2
Medtr0002s1220 Medicago truncatula HOM05D000147 ORTHO05D004093 1.7e-20 103.2 112 46.4
Medtr5g083200 Medicago truncatula HOM05D000147 ORTHO05D004093 1.7e-20 103.2 112 46.4
Medtr1g050488 Medicago truncatula HOM05D000147 ORTHO05D004093 2.9e-20 102.4 115 41.7
Medtr1g069475 Medicago truncatula HOM05D000147 ORTHO05D004093 2.9e-20 102.4 85 54.1
TPR.G18407 Trifolium pratense HOM05D000147 ORTHO05D004093 3.8e-20 102.1 109 44.0
Medtr1g070820 Medicago truncatula HOM05D000147 ORTHO05D004093 1.4e-19 100.1 112 44.6
Medtr3g111390 Medicago truncatula HOM05D000147 ORTHO05D004093 1.4e-19 100.1 112 44.6
Medtr5g034450 Medicago truncatula HOM05D000147 ORTHO05D004093 3.2e-19 99.0 104 46.2
Medtr6g016265 Medicago truncatula HOM05D000147 ORTHO05D004093 1.6e-18 96.7 94 51.1
Medtr0015s0120 Medicago truncatula HOM05D000147 ORTHO05D004093 2.1e-18 96.3 79 54.4
Medtr8g036780 Medicago truncatula HOM05D000147 ORTHO05D004093 2.1e-18 96.3 76 55.3
Medtr8g038340 Medicago truncatula HOM05D000147 ORTHO05D004093 2.1e-18 96.3 78 52.6
Medtr1g081930 Medicago truncatula HOM05D000147 ORTHO05D004093 3.6e-18 95.5 86 50.0
TPR.G29999 Trifolium pratense HOM05D000147 ORTHO05D004093 3.6e-18 95.5 124 40.3
Medtr1g074090 Medicago truncatula HOM05D000147 ORTHO05D004093 4.7e-18 95.1 109 40.4
Medtr3g116210 Medicago truncatula HOM05D000147 ORTHO05D004093 8.0e-18 94.4 85 47.1
Medtr4g094272 Medicago truncatula HOM05D000147 ORTHO05D004093 8.0e-18 94.4 84 53.6
Medtr1g088650 Medicago truncatula HOM05D000147 ORTHO05D004093 1.4e-17 93.6 83 53.0
Medtr2g027020 Medicago truncatula HOM05D000147 ORTHO05D004093 1.4e-17 93.6 87 49.4
Medtr6g089560 Medicago truncatula HOM05D000147 ORTHO05D004093 1.8e-17 93.2 88 47.7
Medtr1g034430 Medicago truncatula HOM05D000147 ORTHO05D004093 2.3e-17 92.8 117 41.9
Medtr8g079540 Medicago truncatula HOM05D000147 ORTHO05D004093 3.9e-17 92.0 93 47.3
Medtr1g017840 Medicago truncatula HOM05D000147 ORTHO05D004093 1.5e-16 90.1 82 50.0
Medtr8g031080 Medicago truncatula HOM05D000147 ORTHO05D004093 2.6e-16 89.4 92 46.7
Psat5g258880 Pisum sativum HOM05D000147 ORTHO05D004093 4.4e-16 88.6 141 36.2
Medtr1g045340 Medicago truncatula HOM05D000147 ORTHO05D004093 5.7e-16 88.2 84 51.2
Medtr2g451430 Medicago truncatula HOM05D000147 ORTHO05D004093 2.8e-15 85.9 76 53.9
Medtr5g085210 Medicago truncatula HOM05D000147 ORTHO05D004093 6.3e-15 84.7 85 45.9
Medtr1g099430 Medicago truncatula HOM05D000147 ORTHO05D004093 8.2e-15 84.3 111 35.1
TPR.G11037 Trifolium pratense HOM05D000147 ORTHO05D004093 8.2e-15 84.3 55 65.5
Medtr4g046027 Medicago truncatula HOM05D000147 ORTHO05D004093 1.1e-14 84.0 66 57.6
Medtr3g462490 Medicago truncatula HOM05D000327 ORTHO05D000218 1.4e-14 83.6 67 50.7
Medtr5g037920 Medicago truncatula HOM05D000147 ORTHO05D004093 1.8e-14 83.2 84 46.4
Medtr8g099580 Medicago truncatula HOM05D000147 ORTHO05D004093 1.8e-14 83.2 81 45.7
Medtr2g017550 Medicago truncatula HOM05D000147 ORTHO05D004093 2.4e-14 82.8 76 47.4
Medtr8g031800 Medicago truncatula HOM05D000147 ORTHO05D004093 2.4e-14 82.8 91 40.7
Medtr1g054905 Medicago truncatula HOM05D000147 ORTHO05D004093 3.1e-14 82.4 69 52.2
Medtr7g013520 Medicago truncatula HOM05D000147 ORTHO05D004093 3.1e-14 82.4 91 44.0
Medtr1g109000 Medicago truncatula HOM05D000147 ORTHO05D004093 9.1e-14 80.9 78 48.7
Medtr6g046670 Medicago truncatula HOM05D000147 ORTHO05D004093 9.1e-14 80.9 109 41.3
TPR.G14874 Trifolium pratense HOM05D000147 ORTHO05D004093 9.1e-14 80.9 86 47.7
TPR.G5236 Trifolium pratense HOM05D000003 ORTHO05D004093 9.1e-14 80.9 87 42.5
Medtr2g011830 Medicago truncatula HOM05D000147 ORTHO05D004093 5.9e-13 78.2 65 52.3
Psat6g221120 Pisum sativum HOM05D000147 ORTHO05D004093 5.9e-13 78.2 85 44.7
Medtr1g087480 Medicago truncatula HOM05D000147 ORTHO05D004093 1.0e-12 77.4 130 34.6
Medtr6g016355 Medicago truncatula HOM05D000147 ORTHO05D004093 1.3e-12 77.0 74 44.6
Medtr8g045330 Medicago truncatula HOM05D000147 ORTHO05D004093 1.7e-12 76.6 67 49.3
Medtr7g063280 Medicago truncatula HOM05D000147 ORTHO05D004093 2.2e-12 76.3 66 47.0
Medtr6g034915 Medicago truncatula HOM05D000147 ORTHO05D004093 2.9e-12 75.9 112 37.5
Medtr2g059470 Medicago truncatula HOM05D000147 ORTHO05D004093 3.8e-12 75.5 62 56.5
Medtr8g098925 Medicago truncatula HOM05D000147 ORTHO05D004093 5.0e-12 75.1 86 44.2
Nn1g02030 Nelumbo nucifera HOM05D000003 ORTHO05D004093 8.5e-12 74.3 88 38.6
Medtr7g078610 Medicago truncatula HOM05D000147 ORTHO05D004093 1.1e-11 73.9 64 51.6
Medtr5g068115 Medicago truncatula HOM05D000147 ORTHO05D004093 1.5e-11 73.6 55 56.4
Medtr4g008270 Medicago truncatula HOM05D000147 ORTHO05D004093 2.5e-11 72.8 65 49.2
Medtr0093s0070 Medicago truncatula HOM05D000147 ORTHO05D004093 3.2e-11 72.4 61 54.1
Medtr1g022215 Medicago truncatula HOM05D000147 ORTHO05D004093 3.2e-11 72.4 67 46.3
Nn1g09632 Nelumbo nucifera HOM05D000003 ORTHO05D000167 3.2e-11 72.4 88 37.5
Medtr8g059135 Medicago truncatula HOM05D000147 ORTHO05D004093 4.2e-11 72.0 61 54.1
Nn1g08273 Nelumbo nucifera HOM05D000003 ORTHO05D000004 4.2e-11 72.0 88 38.6
Medtr4g035890 Medicago truncatula HOM05D000147 ORTHO05D004093 5.5e-11 71.6 62 46.8
Nn1g03437 Nelumbo nucifera HOM05D000003 ORTHO05D000167 5.5e-11 71.6 88 38.6
Medtr8g022750 Medicago truncatula HOM05D000147 ORTHO05D004093 1.2e-10 70.5 107 35.5
Nn8g41081 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.2e-10 70.5 97 33.0
Medtr6g033225 Medicago truncatula HOM05D000147 ORTHO05D004093 1.6e-10 70.1 115 33.9
Psat5g003480 Pisum sativum HOM05D000147 ORTHO05D004093 1.6e-10 70.1 74 44.6
Nn2g10894 Nelumbo nucifera HOM05D000003 ORTHO05D000167 2.1e-10 69.7 88 37.5
Medtr8g028785 Medicago truncatula HOM05D000147 ORTHO05D004093 2.7e-10 69.3 114 36.8
Medtr7g006380 Medicago truncatula HOM05D000147 ORTHO05D004093 4.7e-10 68.6 54 50.0
PSO210G1914 Papaver somniferum HOM05D003407 ORTHO05D001026 4.7e-10 68.6 144 32.6
Lj6C771G2 Lonicera japonica HOM05D003003 ORTHO05D009423 8.0e-10 67.8 74 37.8
TPR.G18397 Trifolium pratense HOM05D000147 ORTHO05D004093 1.0e-09 67.4 58 48.3
Medtr3g064060 Medicago truncatula HOM05D000147 ORTHO05D004093 1.4e-09 67.0 58 56.9
TPR.G33654 Trifolium pratense HOM05D000147 ORTHO05D004093 2.3e-09 66.2 51 56.9
Medtr4g094370 Medicago truncatula HOM05D000147 ORTHO05D004093 3.0e-09 65.9 57 47.4
Medtr2g047100 Medicago truncatula HOM05D000147 ORTHO05D004093 4.0e-09 65.5 49 63.3
Medtr1g074240 Medicago truncatula HOM05D000147 ORTHO05D004093 5.2e-09 65.1 63 47.6
Medtr8g069135 Medicago truncatula HOM05D000147 ORTHO05D004093 5.2e-09 65.1 69 46.4
PSO063G1913 Papaver somniferum HOM05D000003 ORTHO05D000004 6.7e-09 64.7 104 32.7
Lju470C9T6 Lonicera japonica HOM05D000003 ORTHO05D000167 1.2e-08 63.9 76 40.8
Medtr4g006490 Medicago truncatula HOM05D000147 ORTHO05D004093 1.5e-08 63.5 54 50.0
Medtr4g046657 Medicago truncatula HOM05D000147 ORTHO05D004093 1.5e-08 63.5 50 56.0
Medtr5g080690 Medicago truncatula HOM05D000147 ORTHO05D004093 1.5e-08 63.5 56 58.9
Medtr7g006470 Medicago truncatula HOM05D000147 ORTHO05D004093 2.0e-08 63.2 83 38.6
Medtr5g075610 Medicago truncatula HOM05D000147 ORTHO05D004093 2.6e-08 62.8 51 52.9
PSO063G5501 Papaver somniferum HOM05D000003 ORTHO05D001026 3.3e-08 62.4 95 32.6
Medtr3g060800 Medicago truncatula HOM05D000147 ORTHO05D004093 4.4e-08 62.0 49 55.1
Medtr7g053400 Medicago truncatula HOM05D000147 ORTHO05D004093 5.7e-08 61.6 58 44.8
Medtr8g088220 Medicago truncatula HOM05D000147 ORTHO05D004093 5.7e-08 61.6 56 50.0
Medtr5g042170 Medicago truncatula HOM05D000147 ORTHO05D004093 7.5e-08 61.2 76 38.2
Medtr6g016135 Medicago truncatula HOM05D000147 ORTHO05D004093 9.7e-08 60.8 60 45.0
Psat6g111160 Pisum sativum HOM05D000003 ORTHO05D000004 9.7e-08 60.8 58 46.6
Medtr2g102247 Medicago truncatula HOM05D000147 ORTHO05D004093 1.3e-07 60.5 55 50.9
Medtr2g438450 Medicago truncatula HOM05D000147 ORTHO05D004093 1.3e-07 60.5 57 50.9
PSO063G7282 Papaver somniferum HOM05D000003 ORTHO05D001026 1.3e-07 60.5 141 26.2
Medtr1g018300 Medicago truncatula HOM05D000147 ORTHO05D004093 1.7e-07 60.1 85 38.8
Medtr3g010950 Medicago truncatula HOM05D000147 ORTHO05D004093 1.7e-07 60.1 45 55.6
Medtr3g072290 Medicago truncatula HOM05D000147 ORTHO05D004093 2.2e-07 59.7 41 61.0
Psat1g044840 Pisum sativum HOM05D000003 ORTHO05D000004 2.2e-07 59.7 87 29.9
PSO017G0823 Papaver somniferum HOM05D003407 ORTHO05D001026 2.8e-07 59.3 88 36.4
CANSAT25G3224 Cannabis sativa HOM05D000003 ORTHO05D000167 3.7e-07 58.9 92 33.7
Medtr5g091440 Medicago truncatula HOM05D000147 ORTHO05D004093 3.7e-07 58.9 49 51.0
Medtr7g036825 Medicago truncatula HOM05D000147 ORTHO05D004093 3.7e-07 58.9 56 44.6
TWI56G1451 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 3.7e-07 58.9 75 41.3
Atru.chr12.1749 Acer truncatum HOM05D000003 ORTHO05D000167 4.8e-07 58.5 96 32.3
Medtr4g096920 Medicago truncatula HOM05D000147 ORTHO05D004093 4.8e-07 58.5 45 55.6
PSO541G0547 Papaver somniferum HOM05D000003 ORTHO05D001026 4.8e-07 58.5 97 29.9
PSO591G0286 Papaver somniferum HOM05D000003 ORTHO05D000004 4.8e-07 58.5 113 27.4
CANSAT21G1369 Cannabis sativa HOM05D000003 ORTHO05D000004 6.3e-07 58.2 66 42.4
Medtr3g449550 Medicago truncatula HOM05D000147 ORTHO05D004093 6.3e-07 58.2 47 51.1
Medtr1g103580 Medicago truncatula HOM05D000147 ORTHO05D004093 8.2e-07 57.8 36 66.7
PSO063G1602 Papaver somniferum HOM05D000003 ORTHO05D001026 8.2e-07 57.8 95 32.6
PSO782G1618 Papaver somniferum HOM05D000031 ORTHO05D009544 8.2e-07 57.8 96 32.3
PSO170G6566 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-06 57.0 102 28.4
SHI45994 Sapria himalayana HOM05D000003 ORTHO05D000004 1.4e-06 57.0 105 31.4
Sed0017730 Sechium edule HOM05D000003 ORTHO05D000004 1.4e-06 57.0 72 38.9
CANSAT11G1896 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-06 56.6 79 32.9
Medtr2g059130 Medicago truncatula HOM05D000147 ORTHO05D004093 1.8e-06 56.6 44 50.0
Medtr4g023580 Medicago truncatula HOM05D000147 ORTHO05D004093 1.8e-06 56.6 87 36.8
PSO170G4058 Papaver somniferum HOM05D000003 ORTHO05D001026 1.8e-06 56.6 84 32.1
BcaC05g27568 Brassica carinata HOM05D000003 ORTHO05D001498 2.4e-06 56.2 84 29.8
CANSAT78G1435 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-06 56.2 66 39.4
C05p35510 Brassica napus HOM05D000003 ORTHO05D001498 3.1e-06 55.8 84 29.8
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-06 55.8 99 27.3
Medtr5g056500 Medicago truncatula HOM05D013398 ORTHO05D012877 3.1e-06 55.8 86 33.7
Medtr5g430460 Medicago truncatula HOM05D020004 ORTHO05D004093 3.1e-06 55.8 50 48.0
Medtr8g074230 Medicago truncatula HOM05D013398 ORTHO05D012877 3.1e-06 55.8 78 38.5
CANSAT21G2087 Cannabis sativa HOM05D000003 ORTHO05D000167 4.1e-06 55.5 70 38.6
PSO700G0219 Papaver somniferum HOM05D003407 ORTHO05D001026 4.1e-06 55.5 96 32.3
BcaC06g30787 Brassica carinata HOM05D000003 ORTHO05D000004 5.3e-06 55.1 79 34.2
Medtr1964s0010 Medicago truncatula HOM05D000147 ORTHO05D004093 5.3e-06 55.1 42 57.1
PSO170G1515 Papaver somniferum HOM05D000003 ORTHO05D001026 5.3e-06 55.1 112 28.6
PSO675G6735 Papaver somniferum HOM05D000003 ORTHO05D001026 5.3e-06 55.1 87 33.3
BcaC09g49335 Brassica carinata HOM05D000003 ORTHO05D001498 9.1e-06 54.3 87 29.9
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 9.1e-06 54.3 71 33.8
CANSAT80G1791 Cannabis sativa HOM05D000003 ORTHO05D000004 9.1e-06 54.3 67 35.8


User provided reference genes

Program Settings