Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 8.3e-51 203.4 100 100.0
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 1.2e-44 183.0 100 90.0
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 2.1e-41 172.2 96 84.4
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 1.1e-39 166.4 97 81.4
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 1.1e-39 166.4 100 80.0
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 4.7e-38 161.0 97 78.4
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 1.1e-31 139.8 78 82.1
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 2.0e-28 129.0 100 63.0
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 4.4e-28 127.9 88 67.0
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 3.2e-26 121.7 103 60.2
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 2.7e-25 118.6 103 57.3
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 6.0e-17 90.9 102 50.0
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.8e-16 89.4 92 51.1
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 4.3e-15 84.7 99 48.5
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 2.1e-14 82.4 97 50.5
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 8.1e-14 80.5 98 51.0
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 8.1e-14 80.5 104 45.2
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.4e-13 79.7 91 48.4
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.2e-12 76.6 90 45.6
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 1.5e-12 76.3 105 41.9
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.4e-11 70.5 99 41.4
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.1e-10 70.1 91 42.9
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 4.2e-10 68.2 92 42.4
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 5.5e-10 67.8 99 41.4
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.2e-09 66.6 97 41.2
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.5e-09 65.1 87 42.5
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.5e-09 65.1 97 40.2
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.9e-09 63.9 101 33.7
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.3e-08 63.2 97 37.1
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 1.3e-08 63.2 90 43.3
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 1.8e-08 62.8 101 37.6
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 2.3e-08 62.4 98 41.8
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.0e-08 62.0 99 39.4
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 3.9e-08 61.6 100 33.0
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 3.9e-08 61.6 91 44.0
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 5.1e-08 61.2 90 38.9
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.1e-08 61.2 90 44.4
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.1e-08 61.2 90 44.4
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 6.7e-08 60.8 91 40.7
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 8.7e-08 60.5 91 40.7
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.1e-07 60.1 90 40.0
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.1e-07 60.1 91 41.8
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.5e-07 59.7 101 37.6
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 1.5e-07 59.7 92 39.1
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.5e-07 59.7 88 40.9
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.5e-07 59.7 106 35.8
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.9e-07 59.3 88 44.3
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.9e-07 59.3 88 44.3
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.5e-07 58.9 90 37.8
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 2.5e-07 58.9 90 37.8
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.5e-07 58.9 101 37.6
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 2.5e-07 58.9 88 39.8
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 3.3e-07 58.5 90 38.9
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 3.3e-07 58.5 90 38.9
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 3.3e-07 58.5 89 39.3
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 3.3e-07 58.5 102 36.3
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 4.3e-07 58.2 72 38.9
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 4.3e-07 58.2 92 39.1
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.7e-07 57.8 88 39.8
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 5.7e-07 57.8 103 36.9
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.7e-07 57.8 99 39.4
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 7.4e-07 57.4 96 39.6
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 7.4e-07 57.4 99 38.4
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 7.4e-07 57.4 91 42.9
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 9.6e-07 57.0 89 37.1
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 9.6e-07 57.0 101 33.7
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.3e-06 56.6 90 36.7
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.6e-06 56.2 103 35.9
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.6e-06 56.2 103 35.9
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.6e-06 56.2 104 34.6
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.6e-06 56.2 98 38.8
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 2.1e-06 55.8 97 36.1
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 2.8e-06 55.5 100 39.0
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 2.8e-06 55.5 91 39.6
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.8e-06 55.5 102 33.3
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 8.2e-06 53.9 99 37.4
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 8.2e-06 53.9 92 33.7


User provided reference genes

Program Settings