Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 2.2e-283 978.4 544 100.0
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 2.9e-214 748.8 556 74.3
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 3.9e-203 711.8 569 70.5
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 4.4e-154 548.9 597 59.8
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 4.4e-154 548.9 572 61.5
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 7.0e-152 541.6 572 59.6
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 2.7e-151 539.7 591 60.1
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 6.6e-150 535.0 619 55.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 8.0e-140 501.5 597 54.6
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 4.4e-138 495.7 437 66.6
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 3.7e-137 492.7 659 49.2
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 3.7e-137 492.7 659 49.2
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.9e-129 466.5 608 49.0
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.7e-129 466.1 609 47.8
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 5.4e-128 462.2 605 48.8
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 7.8e-127 458.4 597 48.9
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.7e-126 457.2 614 48.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 9.6e-125 451.4 599 47.2
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 3.6e-124 449.5 599 46.9
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 6.2e-124 448.7 617 46.7
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.1e-123 448.0 600 47.0
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.4e-123 446.8 622 46.6
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.2e-122 444.5 585 47.0
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 5.8e-122 442.2 631 44.8
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.6e-122 441.8 611 46.0
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.7e-121 440.7 618 46.6
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.1e-120 438.0 608 48.7
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 5.4e-120 435.6 599 48.9
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.7e-119 433.3 613 45.2
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-117 427.9 605 47.6
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.9e-117 427.2 611 46.3
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.3e-117 426.4 604 45.9
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 4.3e-117 426.0 618 47.1
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.3e-117 426.0 614 47.2
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 9.6e-117 424.9 610 47.2
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 1.3e-116 424.5 569 47.6
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.8e-115 420.6 599 45.9
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 3.4e-114 416.4 641 43.7
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 3.4e-114 416.4 599 46.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.8e-114 415.6 599 44.7
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 9.9e-114 414.8 629 47.9
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.9e-113 413.3 629 43.6
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 4.2e-112 409.5 617 46.5
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 4.6e-111 406.0 605 44.1
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.6e-111 406.0 605 45.0
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 6.0e-111 405.6 675 47.7
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 6.0e-111 405.6 599 46.4
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 2.3e-110 403.7 236 86.4
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 9.6e-109 398.3 604 45.9
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 9.6e-109 398.3 581 44.8
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.2e-108 395.6 615 43.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.5e-106 391.0 603 46.4
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.0e-106 390.6 627 40.8
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 4.5e-106 389.4 603 46.3
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 5.8e-106 389.0 585 41.7
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 7.6e-106 388.7 615 47.2
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.1e-104 384.8 578 46.9
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.9e-104 384.0 605 43.3
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 9.3e-104 381.7 699 43.5
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 2.1e-103 380.6 699 43.9
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.7e-103 380.2 637 40.8
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 6.0e-103 379.0 621 41.5
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.0e-102 376.7 577 45.4
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 5.1e-102 375.9 570 45.3
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.9e-101 374.0 621 45.2
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.9e-101 374.0 596 43.6
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.5e-101 373.6 571 45.0
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 3.3e-101 373.2 571 43.8
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 3.3e-101 373.2 616 42.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.1e-99 368.2 576 43.2
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 4.0e-99 366.3 623 41.6
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 9.0e-99 365.2 571 44.5
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 9.0e-99 365.2 603 40.8
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.5e-96 357.1 561 48.3
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 4.2e-96 356.3 619 41.4
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 7.1e-96 355.5 613 42.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.6e-95 354.4 621 45.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.1e-95 354.0 609 43.8
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 6.0e-95 352.4 601 40.9
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.3e-94 351.3 606 41.7
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.3e-94 350.5 570 42.5
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 3.9e-94 349.7 623 42.2
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.9e-93 347.4 596 42.8
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 3.3e-93 346.7 621 41.9
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 5.7e-93 345.9 621 41.7
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.6e-92 344.4 558 42.5
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 6.2e-92 342.4 611 40.1
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 8.2e-92 342.0 626 38.2
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 3.1e-91 340.1 620 39.2
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 6.9e-91 339.0 616 41.6
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.3e-89 334.7 614 42.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.3e-89 334.7 614 42.0
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 7.1e-88 328.9 509 44.6
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 5.7e-85 319.3 463 44.5
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 7.7e-82 308.9 624 39.1
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 7.7e-82 308.9 624 39.3
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.3e-78 297.4 420 43.8
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 8.2e-76 288.9 555 43.6
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 7.2e-72 275.8 643 37.0
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 3.1e-67 260.4 411 45.7
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 3.5e-66 256.9 546 35.2
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 7.7e-66 255.8 599 35.4
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.5e-64 251.5 401 40.6
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.8e-60 236.5 519 34.5
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 4.2e-56 223.4 514 35.8
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.9e-49 200.7 360 40.6
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 6.1e-47 193.0 285 44.2
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.4e-45 187.2 231 50.6
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 4.7e-39 166.8 472 28.8
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.8e-30 138.3 118 57.6
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-29 135.6 113 61.1
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.1e-27 127.1 98 65.3
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.8e-26 122.9 146 48.6
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.1e-23 114.8 171 43.3
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.6e-23 114.0 94 59.6
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 6.2e-23 113.2 479 26.1
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.8e-22 111.7 75 68.0
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.4e-21 107.5 285 30.2
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 9.8e-21 105.9 129 51.9
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 3.7e-20 104.0 424 26.9
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.9e-19 101.7 134 49.3
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 5.4e-19 100.1 176 52.3
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.0e-18 96.7 273 33.0
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 5.6e-16 90.1 110 43.6
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 5.6e-16 90.1 76 63.2
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.1e-15 88.2 172 33.1
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.8e-14 85.1 278 30.6
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 8.9e-14 82.8 185 36.8
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 3.2e-11 74.3 125 37.6
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 9.2e-11 72.8 116 46.6
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 6.6e-09 66.6 74 52.7
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.1e-06 59.3 134 38.1


User provided reference genes

Program Settings