Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g030870 Medicago truncatula HOM05D007867 ORTHO05D009953 6.9e-17 90.1 67 100.0
Lalb_Chr09g0325761 Lupinus albus HOM05D007867 ORTHO05D009953 3.0e-12 74.7 68 72.1
CiPaw.08G145800 Carya illinoinensis HOM05D007867 ORTHO05D009953 8.7e-12 73.2 67 68.7
vmacro19595 Vaccinium macrocarpon HOM05D007867 ORTHO05D009953 1.1e-11 72.8 66 72.7
Glyma.09G202700 Glycine max HOM05D007867 ORTHO05D009953 1.5e-11 72.4 66 86.4
GSVIVG01006775001 Vitis vinifera HOM05D007867 ORTHO05D009953 2.5e-11 71.6 65 87.7
Dinv36978 Davidia involucrata HOM05D007867 ORTHO05D009953 3.3e-11 71.2 67 68.7
CiPaw.07G042200 Carya illinoinensis HOM05D007867 ORTHO05D009953 7.4e-11 70.1 63 88.9
Gohir.D03G034400 Gossypium hirsutum HOM05D007867 ORTHO05D009953 7.4e-11 70.1 65 87.7
Gorai.003G036100 Gossypium raimondii HOM05D007867 ORTHO05D009953 7.4e-11 70.1 65 87.7
ATR0800G156 Amborella trichopoda HOM05D007867 ORTHO05D009953 9.6e-11 69.7 65 72.3
Manes.13G104200 Manihot esculenta HOM05D007867 ORTHO05D009953 9.6e-11 69.7 65 86.2
Nn1g05680 Nelumbo nucifera HOM05D007867 ORTHO05D009953 9.6e-11 69.7 65 72.3
Nn5g29770 Nelumbo nucifera HOM05D007867 ORTHO05D009953 9.6e-11 69.7 65 86.2
Thecc.01G083600 Theobroma cacao HOM05D007867 ORTHO05D009953 9.6e-11 69.7 65 70.8
Ciclev10027423m.g Citrus clementina HOM05D007867 ORTHO05D009953 2.1e-10 68.6 65 89.2
Actinidia36378 Actinidia chinensis HOM05D007867 ORTHO05D009953 2.8e-10 68.2 65 53.8
CiPaw.08G128500 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.8e-10 68.2 69 58.0
CiPaw.08G145600 Carya illinoinensis HOM05D007867 ORTHO05D009953 2.8e-10 68.2 70 65.7
Ca_13472_v3 Cicer arietinum L. HOM05D007867 ORTHO05D009953 4.8e-10 67.4 67 80.6
Gohir.A11G209001 Gossypium hirsutum HOM05D007867 ORTHO05D009953 6.2e-10 67.0 65 72.3
RcHm_v2.0_Chr2g0109971 Rosa chinensis HOM05D007867 ORTHO05D009953 8.2e-10 66.6 67 65.7
CSS0005733 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 1.1e-09 66.2 42 71.4
Lj2g0008804 Lotus japonicus HOM05D007867 ORTHO05D009953 1.1e-09 66.2 72 63.9
Hma1.2p1_1119F.1_g259180 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 1.4e-09 65.9 45 84.4
Sed0014306 Sechium edule HOM05D007867 ORTHO05D009953 1.4e-09 65.9 65 69.2
CiPaw.05G026800 Carya illinoinensis HOM05D007867 ORTHO05D009953 1.8e-09 65.5 64 73.4
EL10Ac9g22129 Beta vulgaris HOM05D007867 ORTHO05D009953 4.0e-09 64.3 71 73.2
Haze_03934 Corylus avellana HOM05D007867 ORTHO05D009953 4.0e-09 64.3 65 87.7
MD10G1057100 Malus domestica HOM05D007867 ORTHO05D009953 4.0e-09 64.3 66 68.2
RhsimUnG0066800 Rhododendron simsii HOM05D007867 ORTHO05D009953 9.0e-09 63.2 78 44.9
Potri.015G025700 Populus trichocarpa HOM05D007867 ORTHO05D009953 1.5e-08 62.4 43 88.4
Potri.015G025600 Populus trichocarpa HOM05D007867 ORTHO05D009953 2.0e-08 62.0 45 82.2
FvH4_1g18950 Fragaria vesca HOM05D007867 ORTHO05D009953 2.6e-08 61.6 69 63.8
Nitab4.5_0000036g0410 Nicotiana tabacum HOM05D007867 ORTHO05D009953 2.6e-08 61.6 64 85.9
Nitab4.5_0009046g0010 Nicotiana tabacum HOM05D007867 ORTHO05D009953 2.6e-08 61.6 64 85.9
Zm00001eb061250 Zea mays HOM05D007867 ORTHO05D009953 2.6e-08 61.6 69 69.6
Cc07_g07830 Coffea canephora HOM05D007867 ORTHO05D009953 3.4e-08 61.2 68 79.4
Cc02_g20570 Coffea canephora HOM05D007867 ORTHO05D009953 4.5e-08 60.8 64 75.0
Sc03g0000590 Simmondsia chinensis HOM05D007867 ORTHO05D009953 5.8e-08 60.5 70 64.3
Gorai.007G230100 Gossypium raimondii HOM05D007867 ORTHO05D009953 1.0e-07 59.7 65 84.6
TPR.G40500 Trifolium pratense HOM05D007867 ORTHO05D009953 1.0e-07 59.7 25 100.0
Cpa.g.c33237.1 Carica papaya HOM05D007867 ORTHO05D009953 1.3e-07 59.3 65 84.6
Os07g0191650 Oryza sativa ssp. japonica HOM05D007867 ORTHO05D009953 2.2e-07 58.5 76 61.8
Hund00401 Selenicereus undatus HOM05D007867 ORTHO05D009953 2.2e-07 58.5 68 70.6
DCAR_021457 Daucus carota HOM05D000419 ORTHO05D000692 2.9e-07 58.2 44 70.5
Gohir.A05G401300 Gossypium hirsutum HOM05D007867 ORTHO05D009953 2.9e-07 58.2 75 56.0
Gohir.A02G146200 Gossypium hirsutum HOM05D007867 ORTHO05D009953 4.9e-07 57.4 65 84.6
CSS0034185 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 6.5e-07 57.0 24 100.0
TPR.G37059 Trifolium pratense HOM05D007867 ORTHO05D009953 8.4e-07 56.6 68 47.1
SHI12190 Sapria himalayana HOM05D007867 ORTHO05D009953 1.1e-06 56.2 45 68.9
Psat2g134360 Pisum sativum HOM05D007867 ORTHO05D009953 1.4e-06 55.8 65 80.0
Lalb_Chr16g0381471 Lupinus albus HOM05D007867 ORTHO05D009953 2.5e-06 55.1 24 95.8
Gohir.D11G214500 Gossypium hirsutum HOM05D007867 ORTHO05D009953 3.2e-06 54.7 65 64.6
Hma1.2p1_0908F.1_g235690 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 3.2e-06 54.7 66 80.3
MBI16_g26237_MAGBIO Magnolia biondii HOM05D007867 ORTHO05D009953 3.2e-06 54.7 65 81.5
MBI16_g37795_MAGBIO Magnolia biondii HOM05D007867 ORTHO05D009953 4.2e-06 54.3 45 73.3
Potri.012G034400 Populus trichocarpa HOM05D007867 ORTHO05D009953 7.1e-06 53.5 65 80.0
Prupe.8G075700 Prunus persica HOM05D007867 ORTHO05D009953 7.1e-06 53.5 66 80.3
Lalb_Chr16g0383101 Lupinus albus HOM05D007867 ORTHO05D009953 9.3e-06 53.1 46 58.7
Oeu033792.2 Olea europaea HOM05D007867 ORTHO05D009953 9.3e-06 53.1 39 66.7


User provided reference genes

Program Settings