Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 1.9e-229 798.9 432 100.0
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 2.4e-171 605.9 460 75.2
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 9.2e-139 497.7 459 67.3
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 8.1e-135 484.6 462 63.0
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 2.5e-128 463.0 461 61.8
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 3.1e-118 429.5 411 66.7
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.0e-100 371.3 279 70.3
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 2.9e-100 369.8 465 51.6
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.8e-89 334.0 348 56.3
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 6.7e-89 332.0 431 51.0
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 6.7e-89 332.0 431 51.0
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 8.8e-89 331.6 476 48.1
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.8e-84 316.2 414 50.7
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 2.7e-82 310.1 452 48.7
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 6.8e-65 252.3 272 54.4
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 4.8e-63 246.1 390 45.9
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.2e-61 241.5 283 50.9
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.0e-61 240.7 274 50.0
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 2.7e-61 240.4 433 41.3
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 3.8e-60 236.5 425 42.1
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.1e-59 235.0 283 49.8
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.1e-59 235.0 281 50.5
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 5.5e-59 232.6 346 45.4
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.7e-58 230.3 282 48.6
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 3.6e-58 229.9 281 47.3
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 4.7e-58 229.6 430 42.6
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 4.7e-58 229.6 401 40.9
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 8.0e-58 228.8 422 42.7
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 1.0e-57 228.4 392 42.6
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 7.5e-56 222.2 413 39.5
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 9.8e-56 221.9 343 45.2
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.2e-55 220.7 283 47.0
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 2.8e-55 220.3 450 38.2
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.7e-55 219.9 447 39.4
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 8.3e-55 218.8 281 46.6
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.4e-54 218.0 424 38.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.4e-54 217.2 281 46.3
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 3.1e-54 216.9 282 46.1
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 4.1e-54 216.5 424 39.2
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 5.4e-54 216.1 452 37.2
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 9.1e-54 215.3 502 35.1
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 1.6e-53 214.5 279 45.5
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 1.6e-53 214.5 452 37.2
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.6e-53 214.5 274 47.1
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.7e-53 213.8 272 47.8
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 3.5e-53 213.4 502 35.3
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 4.5e-53 213.0 406 37.7
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 7.7e-53 212.2 276 47.1
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.7e-52 211.1 493 36.9
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 2.3e-52 210.7 405 37.0
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.8e-52 209.9 271 46.5
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.8e-52 209.9 271 46.5
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 5.0e-52 209.5 493 36.7
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 3.3e-51 206.8 252 51.6
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 4.2e-51 206.5 424 35.6
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 7.2e-51 205.7 426 38.7
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 7.2e-51 205.7 275 44.7
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 1.6e-50 204.5 262 44.7
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 6.1e-50 202.6 272 46.3
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 6.1e-50 202.6 280 44.6
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.0e-49 201.8 459 35.9
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.8e-49 201.1 375 39.5
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 8.9e-49 198.7 341 40.2
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 8.9e-49 198.7 279 44.4
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.2e-48 198.4 286 46.9
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 2.0e-48 197.6 448 35.9
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 4.4e-48 196.4 288 45.5
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.7e-47 194.5 280 43.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 2.9e-47 193.7 280 43.9
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 2.9e-47 193.7 429 37.5
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.7e-47 193.4 334 39.8
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 3.7e-47 193.4 279 45.9
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 1.1e-46 191.8 289 43.3
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.8e-46 191.0 289 42.6
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.8e-46 191.0 282 43.6
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 2.4e-46 190.7 459 34.4
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.4e-46 190.7 335 40.0
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 1.2e-45 188.3 276 46.0
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 2.0e-45 187.6 353 39.4
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 2.0e-45 187.6 283 41.3
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.5e-45 186.8 243 46.9
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 4.6e-45 186.4 376 38.6
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 5.9e-45 186.0 281 43.1
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 5.9e-45 186.0 274 42.7
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.0e-44 183.0 278 42.8
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 5.0e-44 183.0 278 42.1
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.5e-43 180.6 282 41.8
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 2.5e-43 180.6 261 46.7
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 9.5e-43 178.7 254 43.7
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 2.3e-41 174.1 429 35.4
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 5.2e-41 172.9 374 35.8
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.0e-40 171.0 427 35.8
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 4.4e-40 169.9 391 33.5
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 9.8e-40 168.7 265 42.6
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 9.8e-40 168.7 265 42.6
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 2.2e-39 167.5 265 43.0
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 4.9e-39 166.4 421 35.6
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 1.1e-38 165.2 275 40.0
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.1e-38 165.2 279 37.3
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.4e-38 164.9 275 40.7
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 1.9e-38 164.5 292 40.4
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 2.4e-38 164.1 276 40.6
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 2.4e-38 164.1 276 40.6
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 7.0e-38 162.5 276 40.6
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 2.0e-37 161.0 452 35.2
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 7.8e-37 159.1 280 38.6
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 8.6e-36 155.6 197 44.7
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 4.3e-35 153.3 276 38.0
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 5.6e-35 152.9 448 33.5
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 5.6e-35 152.9 433 34.9
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.2e-34 149.4 447 33.6
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 6.2e-34 149.4 202 45.0
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 5.2e-33 146.4 256 39.8
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 6.8e-33 146.0 232 37.5
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 2.0e-32 144.4 131 55.0
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 9.8e-32 142.1 253 42.3
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 3.1e-25 120.6 221 38.0
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 9.9e-24 115.5 284 32.4
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 9.2e-22 109.0 211 37.4
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.6e-21 108.2 281 30.6
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.1e-21 107.8 273 34.8
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 6.6e-20 102.8 288 29.9
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 4.4e-16 90.1 263 28.9
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.3e-15 88.6 247 31.2
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 2.1e-13 81.3 284 25.4
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 4.6e-13 80.1 233 27.9
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.2e-08 65.5 177 32.8
arahy.Tifrunner.gnm1.ann1.WD7W4L Arachis hypogaea HOM05D001075 ORTHO05D007788 5.4e-06 56.6 56 57.1


User provided reference genes

Program Settings