Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g030480 Medicago truncatula HOM05D008113 ORTHO05D009793 5.9e-89 330.9 171 100.0
Psat2g135920 Pisum sativum HOM05D008113 ORTHO05D009793 8.0e-70 267.3 171 80.7
Ca_06079_v3 Cicer arietinum L. HOM05D008113 ORTHO05D009793 2.3e-69 265.8 171 81.3
Glyma.09G204200 Glycine max HOM05D008113 ORTHO05D009793 3.4e-60 235.3 172 74.4
Lj2g0011936 Lotus japonicus HOM05D008113 ORTHO05D009793 1.6e-57 226.5 170 70.6
Phvul.002G141700 Phaseolus vulgaris HOM05D008113 ORTHO05D009793 5.2e-53 211.5 171 66.7
VMungo1215G1592 Vigna mungo HOM05D008113 ORTHO05D009793 2.6e-52 209.1 172 66.3
Glyma.01G018600 Glycine max HOM05D008113 ORTHO05D009793 1.1e-50 203.8 174 66.1
TPR.G1024 Trifolium pratense HOM05D008113 ORTHO05D009793 3.0e-48 195.7 175 64.6
Cfa012440 Carpinus fangiana HOM05D008113 ORTHO05D009793 4.9e-35 151.8 169 53.8
Lalb_Chr16g0381371 Lupinus albus HOM05D008113 ORTHO05D009793 1.2e-33 147.1 171 53.8
Atru.chr6.1709 Acer truncatum HOM05D008113 ORTHO05D009793 2.1e-33 146.4 166 54.8
QL12p005179 Quercus lobata HOM05D008113 ORTHO05D009793 2.5e-31 139.4 172 50.0
Manes.17G015710 Manihot esculenta HOM05D008113 ORTHO05D009793 3.3e-31 139.0 174 48.9
CiPaw.11G093400 Carya illinoinensis HOM05D008113 ORTHO05D009793 5.3e-29 131.7 173 48.0
Duzib205G0546 Durio zibethinus HOM05D008113 ORTHO05D009793 9.0e-29 131.0 150 52.0
CSS0012952 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 4.5e-28 128.6 175 46.3
CSS0027769 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 4.5e-28 128.6 175 46.3
Thecc.03G227800 Theobroma cacao HOM05D008113 ORTHO05D009793 5.8e-28 128.3 150 52.0
Prupe.5G036500 Prunus persica HOM05D008113 ORTHO05D009793 8.4e-27 124.4 168 48.2
RcHm_v2.0_Chr7g0209731 Rosa chinensis HOM05D008113 ORTHO05D009793 1.1e-26 124.0 169 46.7
FAN08G1006 Fragaria x ananassa HOM05D008113 ORTHO05D009793 1.2e-25 120.6 174 45.4
FvH4_5g22080 Fragaria vesca HOM05D008113 ORTHO05D009793 2.1e-25 119.8 159 47.2
FAN04G2725 Fragaria x ananassa HOM05D008113 ORTHO05D009793 3.5e-25 119.0 174 44.8
COL.COLO4_17032 Corchorus olitorius HOM05D008113 ORTHO05D009793 1.0e-24 117.5 153 50.3
Haze_08228 Corylus avellana HOM05D008113 ORTHO05D009793 1.3e-24 117.1 137 51.1
Sabra01G0111000 Salix brachista HOM05D008113 ORTHO05D009793 1.3e-24 117.1 185 46.5
Dinv28958 Davidia involucrata HOM05D008113 ORTHO05D009793 1.8e-24 116.7 176 46.0
DCAR_008271 Daucus carota HOM05D008113 ORTHO05D009793 2.1e-22 109.8 162 45.7
Gohir.D03G171300 Gossypium hirsutum HOM05D008113 ORTHO05D009793 2.1e-22 109.8 171 47.4
Gorai.003G181900 Gossypium raimondii HOM05D008113 ORTHO05D009793 2.8e-22 109.4 171 46.8
Ciclev10012946m.g Citrus clementina HOM05D008113 ORTHO05D009793 3.7e-22 109.0 175 45.7
Gohir.A03G000900 Gossypium hirsutum HOM05D008113 ORTHO05D009793 1.1e-21 107.5 171 46.8
Potri.001G142300 Populus trichocarpa HOM05D008113 ORTHO05D009793 3.1e-21 105.9 185 44.3
Hma1.2p1_2704F.1_g327140 Hydrangea macrophylla HOM05D008113 ORTHO05D009793 6.9e-21 104.8 174 44.3
TWI60G1148 Tripterygium wilfordii HOM05D008113 ORTHO05D009793 6.9e-21 104.8 153 40.5
CSS0025106 Camellia sinensis var. sinensis HOM05D008113 ORTHO05D009793 2.0e-20 103.2 165 41.2
Hma1.2p1_1063F.1_g253560 Hydrangea macrophylla HOM05D008113 ORTHO05D009793 2.0e-20 103.2 174 43.7
MELO3C003410.2 Cucumis melo HOM05D008113 ORTHO05D009793 4.9e-19 98.6 145 41.4
Rhsim07G0125800 Rhododendron simsii HOM05D008113 ORTHO05D009793 8.4e-19 97.8 164 40.9
CsaV3_3G049170 Cucumis sativus L. HOM05D008113 ORTHO05D009793 1.4e-18 97.1 145 41.4
Rhsim07G0126900 Rhododendron simsii HOM05D008113 ORTHO05D009793 3.2e-18 95.9 173 40.5
FAN18G0344 Fragaria x ananassa HOM05D008113 ORTHO05D009793 1.6e-17 93.6 104 49.0
ECA233G2707 Erigeron canadensis HOM05D008113 ORTHO05D009793 2.1e-17 93.2 142 43.7
Aqoxy3G02349 Aquilegia oxysepala HOM05D008113 ORTHO05D009793 2.7e-17 92.8 158 39.9
Sed0025759 Sechium edule HOM05D008113 ORTHO05D009793 2.7e-17 92.8 173 38.7
Ah.12g055040 Amaranthus hybridus HOM05D008113 ORTHO05D009793 3.5e-17 92.4 150 42.0
Actinidia09200 Actinidia chinensis HOM05D008113 ORTHO05D009793 1.3e-16 90.5 171 38.6
Nn1g08044 Nelumbo nucifera HOM05D008113 ORTHO05D009793 1.3e-16 90.5 173 38.2
MSTRG.1985 Avicennia marina HOM05D008113 ORTHO05D009793 2.3e-16 89.7 188 35.6
THA.LOC104814445 Tarenaya hassleriana HOM05D008113 ORTHO05D009793 2.3e-16 89.7 157 36.9
Sc22g0001540 Simmondsia chinensis HOM05D008113 ORTHO05D009793 3.9e-16 89.0 153 37.3
CANSAT21G0751 Cannabis sativa HOM05D008113 ORTHO05D009793 8.7e-16 87.8 180 39.4
Sed0024146 Sechium edule HOM05D008113 ORTHO05D009793 7.4e-15 84.7 174 36.8
AUR62018715 Chenopodium quinoa HOM05D008113 ORTHO05D009793 2.8e-14 82.8 102 45.1
MBI04_g23600_MAGBIO Magnolia biondii HOM05D008113 ORTHO05D009793 2.8e-14 82.8 156 39.7
AUR62007292 Chenopodium quinoa HOM05D008113 ORTHO05D009793 8.2e-14 81.3 101 44.6
Migut.E00933 Erythranthe guttata HOM05D008113 ORTHO05D009793 8.2e-14 81.3 157 38.2
EL10Ac5g12119 Beta vulgaris HOM05D008113 ORTHO05D009793 1.8e-13 80.1 132 36.4
SGA_v2.0_scaffold20G09258 Striga asiatica HOM05D008113 ORTHO05D009793 5.3e-13 78.6 174 35.6
Actinidia09205 Actinidia chinensis HOM05D008113 ORTHO05D009793 1.5e-12 77.0 129 41.9
CARHR032060 Cardamine hirsuta HOM05D012772 ORTHO05D009793 1.5e-12 77.0 160 34.4
Sp1g28300 Schrenkiella parvula HOM05D012772 ORTHO05D009793 2.0e-12 76.6 177 38.4
MD06G1034200 Malus domestica HOM05D008113 ORTHO05D009793 2.6e-12 76.3 123 42.3
PGSC0003DMG400001153 Solanum tuberosum HOM05D023668 ORTHO05D009793 2.2e-11 73.2 187 30.5
MD06G1034100 Malus domestica HOM05D008113 ORTHO05D009793 8.4e-11 71.2 165 35.2
Carub.0001s3101 Capsella rubella HOM05D012772 ORTHO05D009793 1.9e-10 70.1 181 35.4
PSO782G0685 Papaver somniferum HOM05D008113 ORTHO05D009793 1.9e-10 70.1 160 31.9
PSO063G7600 Papaver somniferum HOM05D008113 ORTHO05D009793 3.2e-10 69.3 166 35.5
Thhalv10009063m.g Eutrema salsugineum HOM05D012772 ORTHO05D009793 9.3e-10 67.8 177 35.6
unitig_22.g5500 Utricularia gibba HOM05D008113 ORTHO05D009793 3.5e-09 65.9 157 35.7
Sopen08g001050 Solanum pennellii HOM05D023668 ORTHO05D009793 3.9e-08 62.4 199 28.1
Nitab4.5_0000804g0140 Nicotiana tabacum HOM05D023668 ORTHO05D009793 7.4e-07 58.2 92 35.9
HPP92_014861 Vanilla planifolia HOM05D008113 ORTHO05D009793 7.4e-07 58.2 158 31.0
Cc08_g02770 Coffea canephora HOM05D008113 ORTHO05D009793 1.3e-06 57.4 90 36.7
AL1G46890 Arabidopsis lyrata HOM05D012772 ORTHO05D009793 2.2e-06 56.6 151 30.5


User provided reference genes

Program Settings