Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 2.2e-123 445.7 232 100.0
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 2.2e-123 445.7 232 100.0
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.8e-101 372.9 233 88.0
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.0e-92 342.8 231 82.7
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 1.1e-80 303.9 235 75.7
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 4.4e-79 298.5 235 72.8
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 2.9e-78 295.8 236 72.9
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.9e-78 295.8 235 71.9
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 8.3e-78 294.3 238 69.7
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 4.0e-72 275.4 237 67.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.9e-70 269.2 235 67.2
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.9e-70 269.2 235 67.2
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 8.3e-70 267.7 235 66.0
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.9e-54 216.1 233 54.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 8.4e-54 214.5 242 54.1
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 2.4e-53 213.0 238 53.8
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 4.2e-53 212.2 235 50.2
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 5.4e-53 211.8 232 56.0
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.7e-52 209.5 236 53.8
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.5e-52 209.1 237 55.7
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.7e-51 206.8 254 52.0
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.3e-51 206.5 254 50.8
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.3e-51 206.5 257 51.8
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 8.7e-51 204.5 235 51.5
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.5e-50 203.0 248 50.8
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-49 200.7 261 50.6
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.6e-49 200.3 237 52.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.2e-49 198.4 241 51.9
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 8.1e-49 198.0 240 50.4
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 8.1e-49 198.0 220 55.9
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.8e-48 196.8 235 50.2
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.2e-47 194.1 238 49.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-47 193.7 240 50.8
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.0e-47 193.4 239 53.1
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 4.5e-47 192.2 250 49.2
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.3e-46 190.7 238 50.4
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.2e-46 189.9 243 52.7
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.8e-46 189.1 240 50.0
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.4e-46 188.3 239 50.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.4e-46 188.3 239 50.6
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.4e-46 188.0 233 47.2
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.1e-45 187.6 243 51.9
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.4e-45 187.2 239 51.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 3.2e-45 186.0 241 51.9
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 4.2e-45 185.7 235 50.6
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 5.4e-45 185.3 236 49.6
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.1e-45 184.9 240 48.3
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 9.3e-45 184.5 240 48.3
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.6e-44 183.7 242 47.9
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.7e-44 183.0 242 47.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 3.5e-44 182.6 242 49.2
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.6e-44 182.2 238 49.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 4.6e-44 182.2 226 50.4
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 7.9e-44 181.4 245 49.0
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.0e-43 181.0 238 49.6
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.3e-43 180.6 238 52.1
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-43 180.6 236 48.7
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 3.9e-43 179.1 236 47.5
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.1e-43 178.7 242 46.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 6.7e-43 178.3 230 47.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.7e-43 177.9 263 47.1
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.6e-42 175.3 233 44.6
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.1e-41 173.3 233 48.5
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.1e-41 173.3 233 44.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.1e-41 173.3 236 47.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.1e-41 173.3 240 47.5
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.1e-41 173.3 236 47.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.8e-41 172.9 236 45.3
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.7e-41 172.6 235 47.2
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.2e-41 171.8 234 44.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.4e-40 169.9 245 48.6
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.1e-40 169.5 236 49.2
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.0e-40 169.1 249 45.8
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.2e-39 167.5 241 46.5
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 7.6e-39 164.9 232 47.0
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.9e-38 162.9 229 45.9
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 6.4e-38 161.8 233 47.2
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.2e-37 159.1 240 41.7
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.6e-36 157.1 243 39.1
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 4.6e-36 155.6 238 44.5
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.6e-36 155.6 256 44.1
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 7.9e-36 154.8 242 43.4
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.3e-35 153.3 246 40.7
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.0e-35 152.9 220 43.2
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 6.7e-35 151.8 243 44.0
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.1e-34 151.0 245 42.9
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.9e-34 150.2 224 45.1
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.1e-33 146.7 280 41.8
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 3.7e-33 146.0 237 40.9
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.4e-32 143.3 170 48.8
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.0e-31 140.2 240 41.7
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 5.8e-31 138.7 245 44.1
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.0e-30 137.9 242 43.0
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.7e-30 137.1 229 38.4
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.7e-30 137.1 239 43.1
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 8.4e-30 134.8 246 38.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.4e-30 134.8 232 42.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.9e-29 133.7 258 39.9
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 5.5e-29 132.1 237 43.0
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-28 131.0 222 40.1
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.6e-28 130.6 245 41.2
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 6.0e-28 128.6 233 42.5
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 6.0e-28 128.6 233 42.5
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-27 127.5 237 39.2
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-27 127.5 237 39.2
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.3e-27 127.5 216 45.4
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 1.8e-27 127.1 237 39.2
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 3.9e-27 125.9 238 39.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.7e-27 125.2 229 39.3
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.1e-26 124.4 249 41.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.9e-26 123.6 234 41.5
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.9e-26 123.6 234 41.5
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.9e-26 123.6 234 41.5
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.9e-26 123.6 245 40.0
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.6e-25 120.6 262 37.8
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.6e-25 120.6 243 38.7
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.2e-25 120.2 242 42.1
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 8.2e-25 118.2 214 40.2
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 8.2e-25 118.2 233 38.6
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.1e-24 117.9 246 39.4
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.8e-24 117.1 266 39.5
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 2.4e-24 116.7 210 40.0
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.1e-24 116.3 240 35.8
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 6.9e-24 115.2 228 39.9
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 6.9e-24 115.2 228 39.9
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.5e-23 114.0 237 35.4
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.3e-22 110.9 232 37.1
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 6.5e-22 108.6 205 37.6
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.1e-21 107.8 234 35.9
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 2.5e-21 106.7 204 37.3
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.2e-21 106.3 238 37.0
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.2e-21 105.9 206 38.8
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.6e-20 102.8 164 42.1
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 4.6e-20 102.4 219 38.8
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.8e-19 100.5 202 37.1
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.1e-19 99.0 223 35.9
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 6.7e-19 98.6 225 35.6
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 9.7e-18 94.7 217 35.5
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.3e-17 92.0 223 37.7
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 8.2e-17 91.7 301 30.9
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 5.3e-16 89.0 248 32.3
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 2.0e-15 87.0 148 45.9
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.3e-14 84.3 303 29.0
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.9e-14 83.2 308 28.2
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 1.4e-13 80.9 187 34.8
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.9e-13 80.5 230 30.4
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 9.4e-13 78.2 102 43.1
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.2e-12 77.8 86 52.3
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 5.1e-11 72.4 208 36.5
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 5.7e-10 68.9 167 32.3
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 7.4e-10 68.6 141 41.8
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.3e-09 67.8 85 50.6
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 2.9e-06 56.6 86 46.5


User provided reference genes

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