Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.7e-42 175.6 91 100.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.6e-24 115.9 78 74.4
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 4.3e-22 107.8 78 71.8
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 7.4e-22 107.1 78 69.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 7.4e-22 107.1 78 69.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.6e-21 105.9 78 67.9
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.6e-21 105.9 78 70.5
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.7e-21 104.8 78 69.2
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 4.8e-21 104.4 78 69.2
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.1e-20 103.2 78 67.9
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 6.9e-20 100.5 77 68.8
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.5e-19 99.4 78 62.8
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 3.4e-19 98.2 78 65.4
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 4.5e-19 97.8 78 64.1
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 5.9e-19 97.4 78 66.7
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 2.2e-18 95.5 78 64.1
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 8.5e-18 93.6 79 62.0
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 2.5e-17 92.0 78 56.4
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.5e-17 92.0 78 55.1
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 4.2e-17 91.3 79 58.2
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 7.2e-17 90.5 79 62.0
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 3.6e-16 88.2 79 57.0
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 7.9e-16 87.0 78 55.1
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.0e-15 86.7 81 58.0
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.4e-15 86.3 79 55.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.8e-15 85.9 78 53.8
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.3e-15 85.5 79 53.2
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-15 85.1 80 53.8
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.9e-15 84.7 76 61.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.9e-15 84.7 76 61.8
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.9e-15 84.7 76 61.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 6.7e-15 84.0 80 55.0
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.1e-14 83.2 76 59.2
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.5e-14 82.8 79 55.7
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 3.3e-14 81.6 78 50.0
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.3e-14 81.6 79 51.9
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 4.3e-14 81.3 78 51.3
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.3e-14 81.3 78 53.8
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 5.7e-14 80.9 76 55.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 5.7e-14 80.9 80 52.5
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 7.4e-14 80.5 78 47.4
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 7.4e-14 80.5 78 47.4
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 9.7e-14 80.1 78 52.6
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.7e-13 79.3 76 53.9
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.7e-13 79.3 62 61.3
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 2.2e-13 79.0 61 62.3
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 2.2e-13 79.0 78 51.3
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 3.7e-13 78.2 79 51.9
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 4.8e-13 77.8 63 60.3
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.8e-13 77.8 67 59.7
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 4.8e-13 77.8 67 59.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.8e-13 77.8 76 55.3
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 6.3e-13 77.4 77 51.9
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 8.2e-13 77.0 79 51.9
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.2e-13 77.0 77 55.8
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.1e-12 76.6 67 58.2
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 1.1e-12 76.6 76 53.9
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.1e-12 76.6 73 58.9
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.1e-12 76.6 80 51.2
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.1e-12 76.6 80 51.2
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.4e-12 76.3 68 54.4
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.4e-12 76.3 79 51.9
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 1.8e-12 75.9 66 57.6
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 2.4e-12 75.5 78 47.4
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.4e-12 75.5 66 60.6
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.4e-12 75.5 78 50.0
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.4e-12 75.5 54 66.7
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 3.1e-12 75.1 78 48.7
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.1e-12 75.1 74 54.1
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 3.1e-12 75.1 65 63.1
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 4.1e-12 74.7 79 50.6
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.1e-12 74.7 55 65.5
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 5.3e-12 74.3 67 55.2
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 6.9e-12 73.9 68 51.5
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 6.9e-12 73.9 76 52.6
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 6.9e-12 73.9 79 48.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 6.9e-12 73.9 76 55.3
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.9e-12 73.9 76 55.3
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.9e-12 73.9 76 55.3
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 9.1e-12 73.6 78 48.7
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 9.1e-12 73.6 74 54.1
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 9.1e-12 73.6 80 48.8
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 9.1e-12 73.6 74 54.1
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.2e-11 73.2 70 51.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.5e-11 72.8 63 55.6
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.5e-11 72.8 64 60.9
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 2.0e-11 72.4 79 49.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 2.0e-11 72.4 75 52.0
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.0e-11 72.4 61 55.7
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.6e-11 72.0 80 46.2
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.6e-11 72.0 61 60.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.6e-11 72.0 78 48.7
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.6e-11 72.0 78 43.6
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.4e-11 71.6 66 57.6
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 3.4e-11 71.6 73 50.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 5.9e-11 70.9 79 48.1
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 5.9e-11 70.9 79 51.9
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 7.7e-11 70.5 79 50.6
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-10 69.7 79 45.6
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.7e-10 69.3 64 57.8
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.7e-10 69.3 63 55.6
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 1.7e-10 69.3 68 51.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.7e-10 69.3 78 43.6
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.7e-10 69.3 78 47.4
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.7e-10 69.3 62 54.8
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.2e-10 68.9 63 55.6
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.2e-10 68.9 61 55.7
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 2.9e-10 68.6 78 44.9
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 2.9e-10 68.6 51 62.7
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 3.8e-10 68.2 78 46.2
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 3.8e-10 68.2 55 58.2
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 3.8e-10 68.2 78 46.2
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 5.0e-10 67.8 70 51.4
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 8.5e-10 67.0 52 61.5
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.1e-09 66.6 67 50.7
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.1e-09 66.6 67 53.7
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 1.4e-09 66.2 60 56.7
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 1.4e-09 66.2 66 51.5
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.5e-09 65.5 67 49.3
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.5e-09 65.5 48 68.8
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.5e-09 65.5 48 68.8
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.5e-09 65.5 78 41.0
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 9.4e-09 63.5 77 46.8
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.2e-08 63.2 70 50.0
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.6e-08 62.8 52 53.8
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.7e-08 62.0 69 44.9
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 6.1e-08 60.8 75 46.7
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 7.9e-08 60.5 52 53.8
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 1.4e-07 59.7 63 47.6
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.8e-07 59.3 69 46.4
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 3.0e-07 58.5 59 50.8
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.3e-06 55.1 67 47.8
TPR.G8100 Trifolium pratense HOM05D000001 ORTHO05D048480 3.3e-06 55.1 44 70.5
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 3.3e-06 55.1 55 47.3


User provided reference genes

Program Settings