Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 1.7e-57 225.7 111 100.0
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 1.8e-54 215.7 111 95.5
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 3.5e-50 201.4 114 90.4
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 1.4e-46 189.5 111 87.4
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 2.3e-41 172.2 112 82.1
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 2.4e-38 162.2 113 76.1
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 5.3e-38 161.0 113 76.1
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 1.7e-36 156.0 111 73.9
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 1.9e-35 152.5 111 73.9
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.3e-33 145.6 114 68.4
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 8.7e-33 143.7 113 70.8
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 3.3e-32 141.7 114 66.7
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.3e-32 141.7 114 66.7
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.3e-32 141.7 114 66.7
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 4.3e-32 141.4 108 71.3
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 9.6e-32 140.2 112 69.6
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.8e-31 138.7 114 65.8
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 4.8e-31 137.9 89 79.8
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 4.8e-31 137.9 113 66.4
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 8.1e-31 137.1 114 64.9
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 8.1e-31 137.1 114 64.9
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 1.1e-30 136.7 114 64.9
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.8e-30 136.0 111 65.8
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 1.2e-29 133.3 115 61.7
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 2.6e-29 132.1 109 66.1
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 3.4e-29 131.7 111 65.8
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 9.9e-29 130.2 110 62.7
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 2.9e-28 128.6 94 75.5
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 3.8e-28 128.3 90 72.2
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 6.4e-28 127.5 109 63.3
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 1.9e-27 125.9 88 73.9
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 3.2e-27 125.2 90 72.2
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 3.2e-27 125.2 90 72.2
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 7.1e-27 124.0 90 71.1
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 9.3e-27 123.6 109 60.6
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 1.2e-26 123.2 91 71.4
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 1.6e-26 122.9 112 64.3
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 1.6e-26 122.9 90 75.6
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 2.7e-26 122.1 170 48.2
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 3.5e-26 121.7 103 67.0
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 6.0e-26 120.9 109 60.6
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 6.0e-26 120.9 103 62.1
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.3e-25 119.0 103 62.1
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 3.0e-25 118.6 100 63.0
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 3.9e-25 118.2 111 61.3
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 5.1e-25 117.9 88 68.2
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 6.7e-25 117.5 100 63.0
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 1.1e-24 116.7 99 63.6
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 2.5e-24 115.5 113 57.5
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 2.5e-24 115.5 103 62.1
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 5.6e-24 114.4 90 65.6
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 7.4e-24 114.0 87 67.8
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 9.6e-24 113.6 90 67.8
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 1.3e-23 113.2 101 58.4
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 1.3e-23 113.2 96 62.5
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 1.6e-23 112.8 107 56.1
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 2.1e-23 112.5 100 60.0
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 2.1e-23 112.5 113 55.8
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 2.1e-23 112.5 100 59.0
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 3.7e-23 111.7 90 65.6
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 3.7e-23 111.7 90 66.7
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 4.8e-23 111.3 90 65.6
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 4.8e-23 111.3 89 70.8
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 6.2e-23 110.9 110 57.3
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 8.2e-23 110.5 109 54.1
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 8.2e-23 110.5 88 65.9
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 1.1e-22 110.2 99 60.6
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 1.1e-22 110.2 99 60.6
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.1e-22 110.2 90 64.4
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 1.8e-22 109.4 91 68.1
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.8e-22 109.4 88 64.8
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 2.4e-22 109.0 88 65.9
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 4.0e-22 108.2 88 65.9
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 9.0e-22 107.1 90 63.3
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 9.0e-22 107.1 90 63.3
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 2.6e-21 105.5 90 62.2
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 2.6e-21 105.5 89 62.9
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 4.5e-21 104.8 90 61.1
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 5.8e-21 104.4 99 57.6
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 5.8e-21 104.4 89 59.6
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 2.2e-20 102.4 90 61.1
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 2.9e-20 102.1 115 52.2
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 6.5e-20 100.9 115 51.3
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 9.3e-19 97.1 122 48.4
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 2.7e-18 95.5 103 53.4
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 6.0e-18 94.4 89 58.4
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 3.0e-17 92.0 106 51.9
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 1.5e-16 89.7 94 55.3
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 3.3e-16 88.6 134 40.3
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 2.8e-15 85.5 56 69.6
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 2.0e-13 79.3 85 50.6
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 2.0e-13 79.3 105 46.7
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 2.2e-12 75.9 53 71.7
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 5.0e-12 74.7 80 50.0
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 1.9e-11 72.8 86 46.5
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 3.2e-11 72.0 67 55.2
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 1.2e-10 70.1 61 60.7
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 1.2e-10 70.1 88 47.7
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 3.0e-09 65.5 40 72.5
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 3.9e-09 65.1 87 47.1
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 5.7e-08 61.2 37 70.3


User provided reference genes

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