Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 0.0e+00 1325.5 700 100.0
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 8.3e-230 800.8 699 68.1
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 1.4e-229 800.0 714 67.6
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 7.5e-223 777.7 728 63.6
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 4.9e-190 668.7 702 59.0
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 4.6e-188 662.1 633 60.0
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 1.0e-187 661.0 703 57.0
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 6.8e-184 648.3 700 56.3
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 6.6e-179 631.7 698 56.7
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 6.4e-174 615.1 718 52.4
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 3.3e-162 576.2 743 52.0
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 3.3e-162 576.2 743 52.0
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 5.0e-110 402.9 708 39.0
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 6.5e-110 402.5 739 39.8
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 4.0e-107 393.3 738 38.3
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 3.4e-106 390.2 764 39.5
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.8e-105 387.1 729 39.0
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 2.0e-103 380.9 697 38.7
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 2.2e-97 360.9 736 37.1
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 5.4e-96 356.3 726 36.8
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 7.0e-96 355.9 725 38.9
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 9.2e-96 355.5 719 35.9
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 4.6e-95 353.2 744 35.8
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.5e-93 348.2 726 35.7
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 4.3e-93 346.7 709 36.1
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 5.6e-93 346.3 731 36.8
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 9.5e-93 345.5 662 37.5
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 2.1e-92 344.4 727 36.0
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 8.0e-92 342.4 727 36.0
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.4e-91 341.7 726 35.3
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 7.5e-90 335.9 725 35.2
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 9.8e-90 335.5 727 34.4
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.7e-89 334.7 646 38.4
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 5.4e-88 329.7 707 34.9
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 1.0e-86 325.5 747 34.9
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.7e-86 324.7 729 36.5
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 2.5e-85 320.9 591 37.1
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 1.6e-84 318.2 677 36.8
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 2.8e-84 317.4 746 34.3
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 6.2e-84 316.2 673 36.0
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 1.5e-82 311.6 730 34.4
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 2.6e-82 310.8 712 36.9
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 4.4e-82 310.1 748 34.2
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 7.5e-82 309.3 666 36.0
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 1.3e-81 308.5 748 35.6
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 4.9e-81 306.6 748 34.1
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 6.4e-81 306.2 725 33.8
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 3.0e-78 297.4 720 33.8
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 3.9e-78 297.0 723 33.9
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 3.9e-78 297.0 723 33.9
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 3.9e-78 297.0 723 33.9
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 8.6e-78 295.8 698 32.7
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 1.5e-77 295.0 624 36.5
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 5.6e-77 293.1 738 33.1
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 5.2e-75 286.6 549 36.6
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 2.6e-74 284.3 522 34.9
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 9.9e-74 282.3 637 33.9
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 1.7e-73 281.6 621 35.4
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 2.9e-73 280.8 486 38.1
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 2.4e-72 277.7 736 32.1
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 7.1e-72 276.2 528 36.0
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 2.7e-71 274.2 229 65.9
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 3.5e-71 273.9 535 38.7
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 4.6e-71 273.5 648 32.7
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 7.8e-71 272.7 927 29.1
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 6.6e-70 269.6 718 33.1
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.9e-69 268.1 712 31.7
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 2.5e-69 267.7 739 31.0
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 4.3e-69 266.9 654 32.4
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 3.6e-68 263.8 772 31.5
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 4.7e-68 263.5 666 33.2
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 3.1e-67 260.8 675 33.2
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 4.4e-66 256.9 780 31.2
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 9.3e-64 249.2 691 32.6
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 6.0e-63 246.5 757 29.2
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 1.3e-62 245.4 644 32.5
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.3e-62 245.4 600 33.2
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 2.3e-62 244.6 664 31.9
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 6.6e-62 243.0 290 49.0
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.1e-61 242.3 738 31.2
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 1.5e-61 241.9 808 31.1
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 6.9e-59 233.0 720 31.8
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 4.5e-58 230.3 291 44.3
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 1.6e-52 211.8 721 29.1
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 2.1e-52 211.5 749 30.4
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 3.1e-51 207.6 536 30.8
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 6.9e-51 206.5 791 27.2
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 6.4e-49 199.9 638 31.8
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 5.5e-48 196.8 276 42.8
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.1e-45 189.1 264 42.0
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 3.8e-41 174.1 508 28.7
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.8e-36 157.9 421 31.8
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 2.8e-28 131.3 151 51.7
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 9.4e-24 116.3 488 27.0
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.1e-22 110.5 123 53.7
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 3.3e-21 107.8 137 43.8
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.7e-20 105.5 427 30.2
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.8e-20 104.8 253 36.0
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 1.4e-19 102.4 703 22.5
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 1.5e-18 99.0 268 31.0
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 8.5e-17 93.2 131 45.0
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.4e-16 92.4 156 36.5
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 9.4e-16 89.7 385 29.9
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 1.2e-15 89.4 124 50.0
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 1.2e-15 89.4 170 36.5
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.1e-15 88.6 311 35.7
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.0e-14 86.3 356 28.7
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.4e-14 85.9 360 28.3
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 5.7e-13 80.5 491 23.4
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 8.5e-09 66.6 85 42.4
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 8.0e-07 60.1 131 30.5
Os02g0128300 Oryza sativa ssp. japonica HOM05D006140 ORTHO05D007834 1.8e-06 58.9 227 24.7


User provided reference genes

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