Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 1.1e-144 516.5 250 100.0
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 3.5e-130 468.4 250 92.4
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 3.1e-123 445.3 252 87.7
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 3.6e-119 431.8 245 86.5
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 2.1e-103 379.4 300 69.0
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 1.8e-102 376.3 250 74.4
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 3.2e-99 365.5 250 72.4
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 7.8e-98 360.9 250 71.2
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 2.3e-94 349.4 251 68.9
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 1.1e-91 340.5 316 58.9
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 2.4e-91 339.3 250 70.0
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 2.7e-90 335.9 250 69.6
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 4.0e-70 268.9 255 54.5
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 7.9e-66 254.6 255 53.7
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 5.1e-65 251.9 252 53.2
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 7.4e-64 248.1 249 52.2
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 5.3e-62 241.9 245 53.1
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 6.9e-62 241.5 250 51.6
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 3.4e-61 239.2 243 49.8
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 4.9e-60 235.3 254 52.0
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 2.5e-59 233.0 318 43.7
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 3.2e-59 232.6 225 53.8
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 4.2e-59 232.3 251 51.0
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.1e-59 231.5 251 50.6
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.5e-58 229.2 254 49.6
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.5e-58 229.2 261 50.6
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 4.6e-58 228.8 261 50.6
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.9e-58 228.0 261 50.6
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 3.0e-57 226.1 252 48.4
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 1.9e-56 223.4 249 47.8
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 3.3e-56 222.6 246 49.6
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 3.3e-56 222.6 246 49.6
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 5.7e-56 221.9 253 48.6
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 6.3e-55 218.4 250 49.2
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 8.2e-55 218.0 249 50.2
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 8.2e-55 218.0 253 45.8
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 4.1e-54 215.7 171 60.2
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 6.9e-54 214.9 250 46.0
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.2e-53 214.2 249 46.6
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.5e-53 213.8 249 46.2
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 4.5e-53 212.2 181 58.6
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 4.5e-53 212.2 248 50.4
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 1.7e-52 210.3 257 47.1
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 4.2e-51 205.7 176 57.4
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.2e-50 204.1 254 46.5
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 6.1e-50 201.8 218 49.1
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 7.9e-50 201.4 226 48.2
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 7.9e-50 201.4 258 45.7
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 7.9e-50 201.4 250 44.0
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.3e-49 200.7 250 45.2
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 1.8e-49 200.3 249 47.4
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 1.8e-49 200.3 254 44.1
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 1.8e-49 200.3 234 44.4
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 5.1e-49 198.7 254 44.1
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 1.1e-48 197.6 255 44.7
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 3.3e-48 196.1 255 44.7
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 9.7e-48 194.5 255 47.1
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 1.6e-47 193.7 244 46.7
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 1.6e-47 193.7 244 44.7
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 2.2e-47 193.4 165 53.3
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 2.8e-47 193.0 249 45.8
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 1.4e-46 190.7 171 52.0
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 2.4e-46 189.9 250 45.6
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 3.1e-46 189.5 210 50.5
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 3.1e-46 189.5 244 44.7
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 9.1e-46 188.0 248 46.4
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 2.0e-45 186.8 244 43.4
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 4.5e-45 185.7 237 45.6
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 1.0e-44 184.5 120 80.0
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 1.4e-43 180.6 256 43.0
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 3.2e-43 179.5 177 48.6
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 3.2e-43 179.5 137 59.1
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 5.5e-43 178.7 172 50.6
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 2.1e-42 176.8 169 49.1
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 6.7e-41 171.8 190 47.4
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 4.4e-40 169.1 230 41.7
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.8e-39 166.4 258 38.8
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 3.7e-39 166.0 227 42.7
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 6.3e-39 165.2 116 62.1
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 6.3e-39 165.2 104 81.7
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 1.8e-38 163.7 250 40.8
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.4e-38 163.3 258 39.1
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 6.9e-38 161.8 220 43.6
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.2e-37 161.0 167 48.5
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 5.9e-37 158.7 102 80.4
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 2.9e-36 156.4 244 41.8
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 5.0e-36 155.6 243 39.5
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 1.9e-35 153.7 162 46.3
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 1.9e-35 153.7 164 45.1
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 3.2e-35 152.9 164 44.5
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 9.4e-35 151.4 162 45.7
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 3.6e-34 149.4 165 44.8
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 3.9e-33 146.0 304 34.9
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 1.5e-32 144.1 234 39.7
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 7.4e-32 141.7 245 39.2
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.1e-30 136.0 127 53.5
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 2.0e-29 133.7 281 35.6
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 1.5e-27 127.5 77 80.5
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 6.1e-26 122.1 236 37.3
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 9.7e-24 114.8 73 76.7
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 3.1e-22 109.8 221 34.4
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 2.9e-20 103.2 115 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 2.5e-19 100.1 187 34.2
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-17 92.4 273 28.6
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 2.0e-16 90.5 113 44.2
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 1.6e-10 70.9 128 40.6
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 3.6e-10 69.7 48 58.3
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 4.0e-09 66.2 236 26.3
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 6.8e-09 65.5 137 34.3
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 1.2e-08 64.7 52 48.1


User provided reference genes

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