Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 3.9e-176 621.3 308 100.0
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 3.7e-150 535.0 305 84.9
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 1.0e-147 526.9 307 83.7
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 6.4e-126 454.5 304 73.4
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 6.0e-124 448.0 302 72.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 1.9e-122 443.0 306 71.2
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 4.0e-120 435.3 301 70.4
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 9.2e-117 424.1 303 71.9
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 2.4e-109 399.4 277 70.0
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 2.4e-109 399.4 277 70.0
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.2e-87 327.4 282 57.8
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 1.3e-86 323.9 229 69.0
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 2.5e-85 319.7 293 55.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.3e-83 313.2 278 55.8
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 2.3e-83 313.2 283 56.5
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 8.7e-83 311.2 280 54.3
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 1.5e-82 310.5 278 55.4
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 5.7e-82 308.5 278 55.0
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.6e-81 307.0 281 54.8
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 2.2e-81 306.6 280 56.1
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 4.8e-81 305.4 303 51.8
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.4e-80 303.9 301 52.5
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 3.1e-80 302.8 301 52.2
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 3.1e-80 302.8 282 54.3
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 5.3e-80 302.0 278 53.2
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 6.9e-80 301.6 284 53.5
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 7.7e-79 298.1 280 54.6
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 6.5e-78 295.0 299 50.8
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 1.1e-77 294.3 280 53.6
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.4e-77 293.9 284 51.8
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 4.2e-77 292.4 304 52.3
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.2e-76 290.8 291 50.5
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-76 290.8 306 51.6
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.2e-76 290.8 306 51.6
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 3.6e-76 289.3 279 52.7
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 6.1e-76 288.5 275 52.7
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 7.9e-76 288.1 277 54.9
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 7.9e-76 288.1 264 57.6
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 1.0e-75 287.7 276 52.5
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.8e-75 287.0 277 54.9
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 6.7e-75 285.0 302 51.0
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 6.7e-75 285.0 295 49.8
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 8.8e-75 284.6 274 52.6
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 8.8e-75 284.6 275 52.4
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 1.5e-74 283.9 274 52.9
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 2.5e-74 283.1 302 50.0
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 7.4e-74 281.6 290 49.3
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 2.2e-73 280.0 277 51.3
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 6.3e-73 278.5 282 51.8
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 1.1e-72 277.7 283 50.2
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 4.1e-72 275.8 233 59.2
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 3.4e-71 272.7 291 50.2
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 5.9e-71 271.9 275 50.9
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 1.3e-70 270.8 281 50.2
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 1.3e-70 270.8 298 48.0
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.7e-70 270.4 290 47.6
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 2.2e-70 270.0 229 57.6
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 2.9e-70 269.6 308 47.1
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 1.2e-68 264.2 275 49.5
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 1.6e-68 263.8 275 49.5
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 3.6e-68 262.7 294 47.3
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.7e-68 262.3 260 50.8
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 7.9e-68 261.5 298 46.3
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 2.3e-67 260.0 247 52.6
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 3.0e-67 259.6 278 49.3
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 1.5e-66 257.3 263 49.8
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 2.6e-66 256.5 306 45.4
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 5.7e-66 255.4 280 48.2
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 6.3e-65 251.9 289 46.7
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.1e-64 251.1 283 48.1
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 1.8e-64 250.4 294 45.6
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 4.1e-64 249.2 252 52.8
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.2e-63 247.7 302 45.4
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.2e-63 247.7 302 45.4
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 1.5e-63 247.3 300 45.7
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 2.0e-63 246.9 274 48.2
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.5e-63 246.1 236 52.1
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 7.7e-63 245.0 302 44.4
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.0e-62 244.6 308 44.5
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.3e-62 244.2 230 53.0
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 2.9e-62 243.0 301 44.9
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 2.9e-62 243.0 301 44.9
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 6.5e-62 241.9 309 42.4
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 6.5e-62 241.9 291 45.7
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 1.1e-61 241.1 307 43.6
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 1.9e-61 240.4 287 44.9
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.6e-60 237.3 311 44.1
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 3.6e-60 236.1 306 43.5
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 1.4e-59 234.2 264 45.8
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 4.4e-58 229.2 302 46.0
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.3e-57 227.6 201 57.7
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 4.8e-57 225.7 177 61.0
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 8.2e-57 224.9 177 60.5
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 1.1e-56 224.6 305 43.6
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 3.1e-56 223.0 298 43.3
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 5.3e-56 222.2 273 45.4
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 9.1e-56 221.5 275 44.4
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 3.5e-55 219.5 218 49.5
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 7.7e-55 218.4 212 51.9
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 3.2e-53 213.0 201 52.7
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 9.4e-53 211.5 221 51.1
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 4.7e-52 209.1 373 35.7
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 6.1e-52 208.8 322 38.8
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.0e-51 208.0 289 41.5
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 8.8e-51 204.9 231 46.3
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 5.7e-50 202.2 212 49.5
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 1.1e-48 198.0 301 40.2
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 2.4e-48 196.8 282 44.0
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 3.8e-46 189.5 193 52.8
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 2.3e-43 180.3 252 42.1
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 5.2e-43 179.1 294 38.4
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 1.2e-42 177.9 294 38.1
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 4.8e-41 172.6 165 49.7
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 1.6e-39 167.5 178 48.9
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 2.7e-39 166.8 182 46.2
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 6.1e-36 155.6 229 38.0
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 7.5e-34 148.7 142 53.5
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 3.1e-27 126.7 82 65.9
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 4.0e-27 126.3 187 36.4
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 1.7e-25 120.9 240 32.5
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 1.2e-23 114.8 231 33.8
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 6.8e-19 99.0 164 40.2
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 5.6e-13 79.3 93 46.2
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.6e-12 77.8 130 32.3
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 8.1e-12 75.5 56 66.1
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 3.4e-10 70.1 106 37.7
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 1.4e-08 64.7 152 31.6
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 1.2e-07 61.6 40 60.0
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 3.5e-07 60.1 44 56.8


User provided reference genes

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