Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1380.9 712 100.0
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1336.6 714 96.4
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1330.1 712 95.5
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1303.1 714 91.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1280.4 712 91.2
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1268.4 713 90.6
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1264.6 707 91.1
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1239.6 711 89.5
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1239.6 711 89.5
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1233.8 704 87.4
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1233.0 712 88.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1231.9 708 87.4
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1230.3 710 87.6
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1228.4 707 87.3
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1223.4 711 86.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1220.7 689 89.8
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1218.8 711 86.5
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1216.4 713 86.5
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1215.7 704 87.8
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1213.4 704 87.1
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1210.7 707 86.1
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1209.1 704 86.2
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1208.7 703 85.8
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1208.4 713 84.7
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1206.4 709 85.5
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1206.4 710 84.8
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1206.0 701 85.6
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1204.9 709 85.6
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1203.3 704 86.1
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1203.0 704 84.9
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1197.2 718 84.5
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 699 85.3
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1194.9 704 85.2
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1194.5 702 85.6
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1190.3 698 85.5
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 705 85.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1188.3 695 85.2
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1187.6 703 84.9
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1187.6 707 84.2
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1187.2 709 83.9
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1186.8 704 85.5
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1184.9 703 84.4
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1183.7 732 82.8
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1181.4 703 84.4
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1181.0 697 84.4
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1179.5 705 84.0
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1166.8 699 82.8
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1164.1 704 83.2
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1163.3 696 83.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1163.3 704 83.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1162.9 713 82.3
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1151.7 711 83.4
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1151.3 714 82.1
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1146.0 705 81.0
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1145.2 705 80.9
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 0.0e+00 1143.6 617 94.5
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1140.9 696 81.6
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1139.8 707 82.5
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1135.6 714 81.9
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1132.9 697 80.9
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1132.5 698 80.9
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1132.1 699 80.3
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1129.0 698 80.5
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1128.6 698 80.2
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1128.6 698 80.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1128.6 698 80.4
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1128.2 697 80.3
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1127.5 715 80.8
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1127.1 705 79.9
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1125.5 698 80.1
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1124.0 699 82.0
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1119.8 699 79.4
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 698 81.7
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 702 82.1
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1117.1 697 78.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1117.1 711 78.2
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1116.7 699 80.4
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 711 78.1
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1115.1 705 78.7
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1113.6 733 79.1
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 711 77.9
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 711 77.9
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 711 77.9
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1109.4 696 78.6
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1106.7 657 85.5
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1098.6 712 76.8
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 705 79.1
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 703 78.1
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 725 78.1
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1080.5 618 86.9
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.1e-310 1068.5 699 76.4
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.1e-309 1066.2 685 80.9
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.3e-307 1059.3 692 76.9
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.8e-307 1057.7 659 81.6
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.7e-305 1050.8 693 78.6
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.0e-303 1045.4 705 77.9
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.2e-300 1036.2 690 75.5
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 3.5e-300 1034.6 700 74.7
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.0e-299 1033.1 658 78.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 9.4e-298 1026.5 706 73.8
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 8.0e-297 1023.5 701 73.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 7.0e-293 1010.4 693 75.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 4.2e-290 1001.1 586 85.7
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.4e-285 985.3 647 75.7
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-284 983.0 731 72.4
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 7.7e-284 980.3 701 71.8
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.8e-278 961.8 541 89.8
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.4e-277 959.5 570 85.3
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 7.5e-263 910.6 695 70.5
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.6e-260 902.9 733 67.1
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.2e-253 878.6 707 66.1
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.8e-240 836.3 527 79.5
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.0e-240 833.9 567 75.0
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 9.0e-240 833.9 536 79.5
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.9e-229 799.7 449 90.0
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 8.4e-214 747.7 678 57.8
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 6.7e-211 738.0 618 64.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.1e-200 702.6 633 56.4
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.2e-197 692.2 556 69.1
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-195 687.2 407 85.5
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.3e-193 680.6 395 86.8
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.7e-177 627.1 666 50.3
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 6.3e-177 625.2 517 66.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.3e-169 598.2 647 48.7
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.9e-167 592.0 639 49.3
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.5e-157 560.1 399 75.9
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.9e-142 509.6 630 43.3
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.9e-142 509.6 640 42.7
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 7.5e-138 495.4 722 43.4
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.4e-136 489.2 641 41.7
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.1e-134 482.6 624 43.3
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.3e-133 479.9 306 77.5
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-110 403.7 399 53.6
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.1e-107 395.2 247 80.6
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-105 388.3 399 57.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.9e-89 334.0 222 72.1
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.5e-74 285.0 227 67.4
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.7e-58 231.1 128 85.9
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.4e-56 222.6 171 71.3
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.5e-37 162.2 143 53.8
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.7e-31 140.6 78 84.6
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 1.1e-27 129.4 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.1e-25 120.6 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.8e-23 114.8 59 88.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 6.8e-22 110.2 95 57.9
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 9.6e-16 89.7 56 76.8
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 1.4e-14 85.9 61 70.5
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 1.8e-14 85.5 65 67.7
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 1.8e-14 85.5 65 67.7
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.7e-12 79.0 63 65.1
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 6.4e-12 77.0 63 65.1
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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