Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.2e-275 952.6 488 100.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 4.3e-177 625.2 504 66.7
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 7.2e-172 607.8 504 66.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.9e-170 602.1 488 67.2
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 8.7e-170 600.9 520 62.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 3.1e-167 592.4 507 65.7
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.5e-140 503.1 532 55.5
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.2e-129 467.6 535 49.7
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 2.8e-123 446.4 534 48.9
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.3e-122 443.4 518 49.2
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 4.1e-119 432.6 514 47.7
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 8.9e-114 414.8 507 46.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.1e-111 406.0 515 47.0
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.1e-111 406.0 518 47.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.3e-108 396.4 517 46.2
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 2.3e-106 390.2 507 46.0
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.2e-105 387.9 511 43.4
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 4.9e-104 382.5 508 44.1
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.2e-103 379.8 511 46.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 9.2e-103 378.3 511 45.8
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 3.5e-102 376.3 515 43.5
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.7e-101 374.0 518 44.6
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 9.5e-100 368.2 506 43.7
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.6e-99 367.5 511 44.6
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.4e-98 364.4 514 43.2
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.4e-97 359.8 499 42.7
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 5.8e-97 359.0 517 41.4
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 9.9e-97 358.2 524 41.4
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.4e-95 354.4 512 41.2
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 3.5e-94 349.7 486 43.0
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.8e-94 348.6 503 41.0
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.3e-93 347.8 516 42.8
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.7e-93 347.4 516 42.2
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.7e-93 347.4 511 43.1
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 2.3e-93 347.1 512 42.2
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 6.6e-93 345.5 483 43.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.9e-92 344.0 546 40.3
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.9e-92 344.0 520 41.9
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 5.6e-92 342.4 507 42.4
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-91 340.9 506 41.1
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.8e-91 340.1 521 39.9
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.7e-91 339.3 510 40.2
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 6.2e-91 339.0 507 40.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.8e-90 337.4 508 42.5
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 4.0e-90 336.3 494 40.7
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 5.2e-90 335.9 503 40.2
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.9e-90 335.5 502 40.0
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.5e-89 334.3 511 41.1
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 7.6e-89 332.0 444 42.6
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.7e-88 330.9 527 38.9
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.8e-88 329.7 503 41.7
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.9e-88 329.3 523 38.6
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 3.2e-87 326.6 498 39.2
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.4e-87 325.9 514 41.8
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.4e-87 325.9 514 41.8
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.5e-86 323.2 498 40.0
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.3e-84 315.5 441 43.5
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 7.3e-84 315.5 507 40.0
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.6e-83 314.3 509 38.5
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.8e-83 313.5 500 38.4
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.4e-82 311.2 476 41.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 3.1e-82 310.1 507 41.0
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.0e-82 309.7 504 39.1
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 4.0e-82 309.7 513 39.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 5.3e-82 309.3 507 41.0
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 5.8e-81 305.8 511 40.3
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.4e-80 302.0 496 38.5
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.9e-79 300.8 498 39.8
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 2.4e-79 300.4 395 42.3
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.1e-79 298.9 504 39.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.6e-78 296.2 503 39.0
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 7.9e-78 295.4 493 38.7
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.5e-76 290.4 532 37.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 4.3e-76 289.7 495 39.4
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 9.6e-76 288.5 495 37.4
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.3e-75 288.1 486 38.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.6e-75 287.7 312 50.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.6e-75 286.6 414 42.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.1e-74 285.0 507 38.1
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.1e-74 285.0 481 37.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 1.4e-74 284.6 503 38.2
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.2e-73 281.6 495 37.2
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.5e-73 281.2 495 37.8
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 2.2e-72 277.3 499 38.3
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 7.1e-71 272.3 497 37.6
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.7e-70 270.4 493 37.7
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 4.6e-70 269.6 506 36.4
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 7.9e-70 268.9 385 39.2
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.9e-69 266.5 489 37.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 6.7e-69 265.8 379 40.4
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 7.4e-68 262.3 505 35.4
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 9.6e-68 261.9 496 35.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.8e-67 259.6 494 38.3
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 8.1e-67 258.8 498 35.7
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.0e-66 256.5 497 35.0
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.6e-65 253.8 388 39.7
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 4.5e-65 253.1 484 34.3
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 7.6e-65 252.3 475 36.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 7.6e-65 252.3 515 35.5
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 7.9e-62 242.3 523 34.0
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.3e-61 241.5 502 36.1
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 3.9e-61 240.0 341 41.3
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.2e-55 219.9 449 34.7
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.7e-54 217.2 325 39.4
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.3e-53 214.9 379 36.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 2.5e-52 210.7 402 36.1
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.5e-49 199.9 467 31.0
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.3e-45 187.6 639 28.2
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 4.4e-44 183.3 485 30.3
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 2.2e-43 181.0 485 31.5
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.8e-43 180.6 258 46.5
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 6.3e-43 179.5 268 40.3
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 9.1e-42 175.6 415 30.8
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.6e-41 174.1 283 38.9
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.6e-41 174.1 491 29.7
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.0e-40 169.9 358 33.2
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.1e-39 168.7 443 30.5
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.1e-39 168.7 417 32.6
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.9e-39 167.9 416 29.6
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.2e-39 167.2 460 29.8
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.3e-37 161.0 239 40.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.1e-36 158.7 248 43.1
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.1e-36 158.7 217 43.3
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.6e-36 157.5 410 30.7
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.1e-34 150.6 222 38.3
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.1e-34 149.1 448 29.0
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 9.1e-34 149.1 249 39.8
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.2e-33 148.7 237 42.2
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-33 148.7 220 39.1
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.0e-32 143.3 166 47.0
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 5.5e-31 139.8 240 37.9
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 7.5e-28 129.4 211 43.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 9.7e-28 129.0 442 27.4
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-25 122.1 239 34.3
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.7e-25 119.4 192 38.0
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 7.7e-25 119.4 171 39.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 2.5e-23 114.4 153 40.5
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.3e-21 107.8 189 34.9
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.7e-17 94.4 123 41.5
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 6.5e-16 89.7 128 40.6
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.6e-16 89.4 103 45.6
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 9.5e-15 85.9 82 53.7
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.6e-14 85.1 103 44.7
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.1e-14 84.7 98 45.9
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 4.7e-14 83.6 83 49.4
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.0e-14 82.8 100 48.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.4e-13 82.0 202 30.7
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 2.0e-12 78.2 140 35.0
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.9e-11 73.6 80 46.2
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.6e-09 68.6 66 43.9
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.5e-07 62.0 46 60.9
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.3e-07 60.5 139 29.5


User provided reference genes

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