Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 2.4e-254 881.7 449 100.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 5.0e-196 688.0 449 79.7
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 6.8e-185 651.0 505 68.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 3.2e-174 615.5 450 71.8
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 3.5e-173 612.1 449 73.3
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.0e-172 610.5 405 77.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 3.9e-172 608.6 449 72.6
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 7.8e-165 584.3 452 67.3
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 8.6e-164 580.9 452 66.6
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.5e-163 577.4 452 66.2
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.8e-162 575.9 449 69.7
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.8e-162 575.9 452 65.7
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.4e-161 573.5 450 66.9
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.8e-161 573.2 454 67.4
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.8e-161 573.2 449 67.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 9.9e-160 567.4 449 66.4
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 3.7e-159 565.5 449 65.5
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 5.4e-158 561.6 456 65.4
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.7e-157 559.3 452 66.8
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.3e-156 557.0 467 63.4
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 6.6e-156 554.7 451 64.7
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.5e-155 552.7 456 65.4
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.2e-154 550.4 449 65.5
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.6e-154 548.9 453 65.8
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 8.1e-154 547.7 452 66.2
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 3.1e-153 545.8 452 63.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.5e-152 543.5 447 64.7
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.5e-152 543.5 460 63.5
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 9.9e-152 540.8 424 66.7
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.3e-151 540.4 459 62.5
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.4e-150 536.2 452 63.5
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.6e-149 533.5 423 67.1
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 3.5e-149 532.3 451 63.4
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 2.3e-148 529.6 453 61.8
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.5e-147 526.9 451 62.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 2.5e-147 526.2 412 66.5
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 3.3e-147 525.8 451 62.1
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.2e-146 523.9 424 65.6
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.6e-146 523.5 456 59.6
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 8.1e-146 521.2 467 61.0
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 4.0e-145 518.8 447 61.5
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 6.9e-145 518.1 426 64.6
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.4e-144 515.8 420 64.0
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.7e-143 513.5 461 58.1
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.9e-143 512.7 431 64.3
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 6.4e-143 511.5 472 60.0
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 9.3e-142 507.7 425 63.3
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.2e-141 507.3 416 63.5
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 4.6e-141 505.4 452 61.1
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.3e-140 503.1 399 65.7
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 3.0e-140 502.7 434 62.4
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.0e-140 502.7 407 64.1
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 5.1e-140 501.9 485 57.7
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.1e-140 501.9 424 64.6
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.7e-140 501.1 432 61.6
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.5e-139 500.4 452 61.1
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.5e-139 499.6 451 60.5
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 7.3e-139 498.0 439 62.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.3e-138 497.3 404 64.9
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 1.6e-138 496.9 454 59.7
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.6e-138 496.9 455 58.7
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.8e-138 496.1 386 66.8
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 3.6e-138 495.7 454 59.3
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 4.8e-138 495.4 417 61.2
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 6.2e-138 495.0 452 58.6
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.1e-137 494.2 452 58.6
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.4e-137 493.0 453 59.2
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 3.4e-136 489.2 457 58.0
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 3.4e-136 489.2 457 58.9
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 3.4e-136 489.2 373 70.8
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 5.8e-136 488.4 430 60.9
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.3e-135 487.3 450 58.7
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.7e-135 486.9 430 60.7
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.9e-135 486.1 356 69.4
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.1e-134 484.2 482 55.0
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.2e-134 482.6 480 56.9
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.2e-134 482.6 451 57.4
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 5.4e-134 481.9 446 57.0
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.4e-134 481.9 480 56.0
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 9.3e-134 481.1 419 62.5
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.6e-133 480.3 452 57.3
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.5e-133 479.2 425 61.6
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.0e-132 477.6 329 72.9
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.8e-132 476.9 448 58.5
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 5.1e-132 475.3 432 59.7
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 6.7e-132 474.9 461 57.5
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 8.7e-132 474.6 455 56.9
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.5e-131 473.8 424 59.0
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.3e-131 472.6 449 57.7
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 5.6e-131 471.9 456 57.2
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.6e-131 471.9 452 57.1
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 9.6e-131 471.1 410 59.8
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.3e-130 470.7 450 58.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.6e-130 470.3 434 58.5
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 3.1e-129 466.1 499 55.9
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-126 457.6 429 58.5
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 4.2e-126 455.7 461 55.1
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 2.1e-125 453.4 475 53.9
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 6.0e-125 451.8 353 64.3
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-124 450.3 442 56.3
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.8e-124 450.3 425 56.5
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 5.1e-124 448.7 432 57.2
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.3e-123 445.7 458 54.8
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 4.3e-123 445.7 352 64.5
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.4e-121 440.7 425 57.6
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.8e-121 440.3 425 52.5
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.4e-121 439.9 385 60.8
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 4.5e-120 435.6 499 53.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.7e-119 433.7 464 49.8
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 3.8e-119 432.6 428 54.9
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.6e-117 425.6 474 52.7
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 7.9e-117 424.9 411 56.4
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 7.9e-117 424.9 379 61.7
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.9e-116 422.5 515 49.5
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 8.7e-116 421.4 264 78.4
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 1.5e-115 420.6 277 75.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.6e-114 417.2 451 52.1
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.6e-114 417.2 330 64.2
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.2e-114 416.8 449 52.6
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 8.2e-114 414.8 411 55.5
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.1e-113 414.5 451 51.9
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 6.9e-113 411.8 431 50.3
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.0e-111 407.9 410 54.1
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 6.5e-111 405.2 399 54.4
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 6.5e-111 405.2 440 49.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.1e-109 400.2 461 51.2
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 4.3e-107 392.5 287 71.1
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 7.4e-107 391.7 327 57.5
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 9.7e-107 391.3 405 54.3
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.8e-105 387.1 290 65.9
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 3.1e-105 386.3 326 60.7
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 5.9e-104 382.1 427 51.1
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.7e-103 380.6 410 50.5
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 5.3e-97 359.0 361 54.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 2.5e-94 350.1 409 50.6
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 2.1e-93 347.1 381 49.3
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-93 346.7 409 48.7
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.0e-92 343.2 415 47.2
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 6.7e-92 342.0 459 42.7
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.7e-91 339.0 453 44.6
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.3e-90 337.8 395 48.1
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 3.7e-90 336.3 352 53.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 8.0e-85 318.5 372 48.1
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.0e-84 318.2 372 48.1
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-84 317.8 440 44.1
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-80 304.3 361 47.4
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 6.5e-79 298.9 208 71.6
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.6e-77 294.3 362 46.4
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.3e-74 284.6 277 57.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.4e-73 280.4 370 45.7
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 4.1e-65 253.1 169 76.9
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.7e-64 250.4 168 76.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.5e-59 234.6 480 34.2
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 3.4e-51 206.8 201 54.2
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.9e-50 203.0 153 66.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 7.8e-48 195.7 144 66.0
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 5.1e-39 166.4 142 63.4
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.4e-36 158.3 166 53.0
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.9e-33 147.9 145 53.1
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.6e-32 144.8 94 70.2
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-28 131.3 119 57.1
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-26 124.8 98 60.2
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.4e-25 119.8 133 51.1
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-24 118.2 94 60.6
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.6e-24 116.7 84 70.2
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 7.9e-24 115.9 101 58.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-23 115.2 94 60.6
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.4e-20 104.4 291 28.9
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.7e-18 98.2 63 81.0
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.9e-18 97.4 73 69.9
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 4.9e-18 96.7 151 44.4
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 4.6e-16 90.1 204 35.3
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 8.7e-15 85.9 149 40.3
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 5.3e-12 76.6 69 50.7
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 5.3e-12 76.6 69 50.7
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.5e-11 75.1 102 44.1
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 3.8e-10 70.5 49 65.3
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 6.5e-10 69.7 202 31.2
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.9e-09 68.2 130 37.7
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 1.6e-08 65.1 39 76.9
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 1.1e-06 58.9 89 41.6
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.5e-06 58.5 206 29.6


User provided reference genes

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