Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g024430 Medicago truncatula HOM05D000307 ORTHO05D000166 3.4e-49 198.0 97 100.0
Psat5g149320 Pisum sativum HOM05D000307 ORTHO05D000166 1.1e-07 60.1 41 61.0
TPR.G15867 Trifolium pratense HOM05D000307 ORTHO05D000166 1.9e-07 59.3 42 64.3
Psat5g147920 Pisum sativum HOM05D000307 ORTHO05D000166 2.5e-07 58.9 42 66.7
Medtr7g075890 Medicago truncatula HOM05D000015 ORTHO05D000270 3.2e-07 58.5 37 64.9
Nitab4.5_0000009g0060 Nicotiana tabacum HOM05D000307 ORTHO05D000166 4.2e-07 58.2 43 58.1
Psat5g149120 Pisum sativum HOM05D000307 ORTHO05D000166 7.2e-07 57.4 42 64.3
TPR.G27721 Trifolium pratense HOM05D000307 ORTHO05D000166 7.2e-07 57.4 42 61.9
Dinv24518 Davidia involucrata HOM05D000307 ORTHO05D000166 1.2e-06 56.6 43 62.8
Lalb_Chr15g0087791 Lupinus albus HOM05D000307 ORTHO05D000166 1.2e-06 56.6 41 61.0
Medtr7g100970 Medicago truncatula HOM05D002562 ORTHO05D002808 1.2e-06 56.6 41 53.7
Phvul.006G077400 Phaseolus vulgaris HOM05D000307 ORTHO05D000166 1.2e-06 56.6 42 61.9
TPR.G15860 Trifolium pratense HOM05D000307 ORTHO05D000166 1.2e-06 56.6 42 61.9
TWI12G0834 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 1.2e-06 56.6 43 60.5
Sp6g04860 Schrenkiella parvula HOM05D000307 ORTHO05D000166 1.6e-06 56.2 43 62.8
TPR.G27382 Trifolium pratense HOM05D000307 ORTHO05D000166 1.6e-06 56.2 54 53.7
AT3G05860 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 2.1e-06 55.8 44 56.8
BcaC05g29775 Brassica carinata HOM05D000307 ORTHO05D000166 2.1e-06 55.8 48 58.3
Cc02_g35890 Coffea canephora HOM05D000307 ORTHO05D000166 2.1e-06 55.8 43 60.5
Psat5g162080 Pisum sativum HOM05D002562 ORTHO05D002808 2.1e-06 55.8 70 40.0
RcHm_v2.0_Chr1g0346681 Rosa chinensis HOM05D000307 ORTHO05D000166 2.1e-06 55.8 44 56.8
TPR.G24006 Trifolium pratense HOM05D000307 ORTHO05D000166 2.1e-06 55.8 42 59.5
VMungo0540G0342 Vigna mungo HOM05D000307 ORTHO05D000166 2.1e-06 55.8 42 61.9
Thhalv10022373m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 2.7e-06 55.5 43 62.8
TAR365G0777 Trochodendron aralioides HOM05D000307 ORTHO05D000166 2.7e-06 55.5 43 55.8
Aa31LG5G16270 Aethionema arabicum HOM05D000307 ORTHO05D000166 3.6e-06 55.1 43 62.8
Thhalv10023873m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 3.6e-06 55.1 43 62.8
Gorai.004G229600 Gossypium raimondii HOM05D000307 ORTHO05D000166 3.6e-06 55.1 50 50.0
RcHm_v2.0_Chr1g0347651 Rosa chinensis HOM05D000307 ORTHO05D000166 3.6e-06 55.1 42 59.5
BcaC04g21253 Brassica carinata HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
A02p25430 Brassica napus HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
A09p26700 Brassica napus HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
C02p40480 Brassica napus HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
C09p33810 Brassica napus HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
BolC9t56218H Brassica oleracea HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
BraA02t07531Z Brassica rapa HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
BraA09t38241Z Brassica rapa HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
CARHR119540 Cardamine hirsuta HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 60.5
Thhalv10019451m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 58.1
Thhalv10024119m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 60.5
Lalb_Chr18g0054231 Lupinus albus HOM05D000307 ORTHO05D000166 4.6e-06 54.7 42 59.5
Psat5g119400 Pisum sativum HOM05D000307 ORTHO05D000166 4.6e-06 54.7 43 60.5
Carub.0003s0523 Capsella rubella HOM05D000307 ORTHO05D000166 6.1e-06 54.3 43 58.1
Lsat_1_v5_gn_3_36000 Lactuca sativa HOM05D000307 ORTHO05D000166 6.1e-06 54.3 43 55.8
Lsat_1_v5_gn_3_36681 Lactuca sativa HOM05D000307 ORTHO05D000166 6.1e-06 54.3 43 55.8
Lj5P318T22 Lonicera japonica HOM05D000307 ORTHO05D000166 6.1e-06 54.3 43 58.1
Lalb_Chr15g0087771 Lupinus albus HOM05D000307 ORTHO05D000166 6.1e-06 54.3 42 57.1
Potri.013G001700 Populus trichocarpa HOM05D000307 ORTHO05D000166 6.1e-06 54.3 43 60.5
Rhsim11G0105500 Rhododendron simsii HOM05D000307 ORTHO05D000166 6.1e-06 54.3 43 55.8
arahy.Tifrunner.gnm1.ann1.XP8I2L Arachis hypogaea HOM05D000307 ORTHO05D000166 7.9e-06 53.9 48 52.1
BcaB01g01762 Brassica carinata HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 55.8
BcaC05g30082 Brassica carinata HOM05D000307 ORTHO05D000166 7.9e-06 53.9 49 53.1
A05p42190 Brassica napus HOM05D000307 ORTHO05D000166 7.9e-06 53.9 49 53.1
C05p61410 Brassica napus HOM05D000307 ORTHO05D000166 7.9e-06 53.9 49 53.1
BolC5t34799H Brassica oleracea HOM05D000307 ORTHO05D000166 7.9e-06 53.9 49 53.1
BraA05t22938Z Brassica rapa HOM05D000307 ORTHO05D000166 7.9e-06 53.9 49 53.1
Cpa.g.sc34.41 Carica papaya HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 55.8
ECA246G5209 Erigeron canadensis HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
Thhalv10019516m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 55.8
Thhalv10019579m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
Thhalv10019751m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
Thhalv10024162m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 62.8
FAN03G1227 Fragaria x ananassa HOM05D000307 ORTHO05D000166 7.9e-06 53.9 44 56.8
HanXRQChr02g0058811 Helianthus annuus HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
HanXRQChr10g0296351 Helianthus annuus HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
HanXRQChr10g0296361 Helianthus annuus HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
HanXRQChr15g0479291 Helianthus annuus HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
HanXRQChr15g0479321 Helianthus annuus HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 58.1
Lsat_1_v5_gn_3_36661 Lactuca sativa HOM05D000307 ORTHO05D000166 7.9e-06 53.9 43 53.5


User provided reference genes

Program Settings