Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 0.0e+00 1130.9 923 100.0
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.2e-236 823.9 861 74.0
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 9.2e-221 771.2 777 72.8
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.3e-209 734.2 776 69.2
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 5.8e-207 725.3 777 70.8
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 5.8e-207 725.3 780 75.8
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-190 670.6 773 72.1
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-190 670.6 773 72.1
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 3.5e-188 662.9 777 71.6
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.5e-186 657.5 801 72.0
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.3e-182 644.4 768 72.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 1.3e-179 634.4 768 65.8
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 8.7e-179 631.7 777 70.9
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 1.4e-176 624.4 802 61.5
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.3e-174 617.8 779 62.3
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 5.7e-170 602.4 768 62.5
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.1e-168 598.2 768 55.5
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.5e-167 594.3 774 57.8
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 2.9e-166 590.1 739 62.1
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 6.1e-164 582.4 771 60.8
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 6.7e-163 578.9 782 57.4
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.5e-162 577.8 787 54.9
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.0e-162 577.4 771 65.6
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 6.3e-161 572.4 771 62.0
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.1e-160 571.6 768 64.6
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 7.0e-160 568.9 780 58.3
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 5.9e-159 565.8 783 55.8
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 7.7e-159 565.5 771 60.6
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.5e-158 562.4 769 54.7
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 3.2e-157 560.1 754 62.5
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 4.2e-157 559.7 780 59.7
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 7.2e-157 558.9 774 62.1
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.0e-156 555.4 754 62.6
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 2.0e-154 550.8 775 57.9
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 4.4e-154 549.7 772 54.4
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 1.8e-152 544.3 781 58.9
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 4.2e-149 533.1 512 61.1
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.4e-147 528.1 763 62.6
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.3e-147 527.3 768 59.4
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 5.7e-146 522.7 764 55.1
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 9.8e-146 521.9 745 55.6
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.2e-145 520.8 769 57.5
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 4.8e-145 519.6 744 55.1
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.4e-144 517.3 718 61.0
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 4.1e-144 516.5 768 54.7
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 9.1e-144 515.4 769 59.6
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 1.6e-143 514.6 769 59.4
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 2.7e-143 513.8 763 61.3
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.0e-142 511.9 781 60.6
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 1.0e-142 511.9 752 59.4
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 2.5e-141 507.3 774 55.0
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.3e-139 500.7 782 50.6
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 3.0e-139 500.4 774 51.9
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 8.9e-139 498.8 772 50.3
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 8.9e-139 498.8 766 53.7
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 5.7e-138 496.1 765 55.3
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.7e-137 494.6 754 55.8
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 2.8e-137 493.8 768 53.1
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.8e-137 493.8 780 59.5
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 8.3e-137 492.3 756 53.8
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.1e-136 491.9 754 64.3
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.4e-136 491.5 780 57.8
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 3.1e-136 490.3 741 54.4
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 9.2e-136 488.8 775 57.4
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 9.2e-136 488.8 774 55.0
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.3e-134 485.0 743 58.0
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.3e-134 485.0 770 55.8
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 2.9e-134 483.8 749 56.5
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 4.3e-133 479.9 744 57.9
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 4.3e-133 479.9 779 53.4
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.6e-132 478.0 832 53.4
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.8e-132 477.2 750 57.2
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 8.0e-132 475.7 752 52.4
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.0e-131 475.3 743 57.6
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.0e-131 475.3 743 57.6
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 7.5e-130 469.2 740 57.4
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.7e-129 468.0 778 54.2
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 8.6e-126 455.7 791 46.9
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.8e-124 450.7 774 51.6
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 6.2e-124 449.5 770 62.2
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.0e-122 444.5 774 49.7
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.7e-121 441.4 791 49.6
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.0e-118 430.6 783 54.2
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 3.0e-118 430.6 503 65.6
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 6.6e-118 429.5 772 47.9
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 7.3e-117 426.0 786 46.8
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.3e-113 415.2 796 48.4
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 1.6e-111 408.3 761 46.5
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 5.1e-110 403.3 750 50.9
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.4e-107 395.2 756 50.4
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.2e-104 384.0 776 50.1
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 9.2e-104 382.5 750 47.3
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 2.7e-103 380.9 732 57.2
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.3e-102 377.9 767 49.5
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 2.3e-102 377.9 569 71.4
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.3e-97 362.1 779 45.8
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 5.4e-96 356.7 418 58.6
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 8.7e-86 322.8 787 45.1
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 3.3e-85 320.9 200 88.0
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 1.8e-78 298.5 513 40.7
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.4e-75 288.9 756 32.3
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.8e-75 288.5 768 46.0
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.0e-70 271.2 255 61.6
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 6.7e-70 270.0 191 78.5
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 6.7e-70 270.0 771 40.2
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.2e-68 265.0 255 60.4
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 3.2e-64 251.1 559 59.4
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 9.4e-64 249.6 559 60.5
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 2.3e-62 245.0 670 32.8
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 7.7e-50 203.4 133 83.5
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.8e-46 192.2 774 27.6
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 7.4e-45 186.8 206 58.3
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.1e-43 181.0 768 36.1
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 4.1e-43 181.0 138 79.0
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.6e-42 178.3 123 78.9
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 6.5e-41 173.7 180 58.9
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.2e-40 171.4 165 62.4
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.7e-39 168.3 128 69.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-33 147.1 267 41.9
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.4e-30 139.4 365 57.0
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.4e-27 127.5 126 57.9
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 3.0e-22 111.7 84 69.0
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 8.9e-22 110.2 95 73.7
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.2e-18 99.8 126 46.8
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.0e-18 99.0 78 73.1
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 1.0e-17 96.7 131 45.0
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 6.6e-17 94.0 135 47.4
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.9e-16 92.4 56 87.5
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.3e-14 85.5 55 80.0
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 4.4e-13 81.3 130 40.8
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.4e-11 75.5 127 37.0
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 2.3e-09 68.9 73 50.7
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.5e-08 65.5 97 39.2
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 2.5e-08 65.5 52 73.1
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 5.6e-08 64.3 44 68.2
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 7.3e-08 63.9 48 75.0
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.8e-07 62.0 74 51.4
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 6.2e-07 60.8 49 57.1


User provided reference genes

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