Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g022810 Medicago truncatula HOM05D000001 ORTHO05D000501 1.3e-136 489.6 230 100.0
Medtr1g048200 Medicago truncatula HOM05D000001 ORTHO05D021353 2.0e-31 140.2 205 42.0
Medtr3g030640 Medicago truncatula HOM05D000001 ORTHO05D000501 1.9e-29 133.7 200 41.5
Medtr3g030660 Medicago truncatula HOM05D000001 ORTHO05D000501 7.1e-29 131.7 199 41.7
Psat0s2608g0040 Pisum sativum HOM05D000001 ORTHO05D000501 9.2e-29 131.3 202 37.1
Psat5g059080 Pisum sativum HOM05D000001 ORTHO05D000501 1.8e-24 117.1 198 33.3
Psat7g143320 Pisum sativum HOM05D000001 ORTHO05D016299 2.6e-23 113.2 198 31.3
VMungo0485G0002 Vigna mungo HOM05D000001 ORTHO05D000501 4.6e-20 102.4 196 31.1
Medtr2g104370 Medicago truncatula HOM05D000001 ORTHO05D000501 1.0e-19 101.3 188 35.1
VMungo0720G1318 Vigna mungo HOM05D000001 ORTHO05D000501 6.6e-19 98.6 213 30.5
Os07g0629900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 1.5e-18 97.4 175 30.3
Medtr4g057825 Medicago truncatula HOM05D000001 ORTHO05D000501 1.9e-18 97.1 198 31.8
Medtr6g071425 Medicago truncatula HOM05D000001 ORTHO05D000501 2.5e-18 96.7 203 28.6
arahy.Tifrunner.gnm1.ann1.47SRJF Arachis hypogaea HOM05D000001 ORTHO05D000501 4.3e-18 95.9 176 30.7
Psat7g148720 Pisum sativum HOM05D000001 ORTHO05D000501 4.3e-18 95.9 189 31.7
QL03p023892 Quercus lobata HOM05D000001 ORTHO05D000501 7.3e-18 95.1 225 30.7
TPR.G25368 Trifolium pratense HOM05D000001 ORTHO05D000501 1.6e-17 94.0 169 31.4
CAN.G2485.1 Capsicum annuum HOM05D010663 ORTHO05D011474 2.1e-17 93.6 209 30.1
CAN.G567.39 Capsicum annuum HOM05D010663 ORTHO05D011474 2.1e-17 93.6 209 30.1
QL03p023809 Quercus lobata HOM05D000001 ORTHO05D000501 2.1e-17 93.6 201 31.3
MSTRG.702 Avicennia marina HOM05D000001 ORTHO05D000501 8.1e-17 91.7 201 31.8
Phvul.004G052000 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 8.1e-17 91.7 202 29.7
Cfa000442 Carpinus fangiana HOM05D000001 ORTHO05D000501 1.4e-16 90.9 192 28.6
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.4e-16 90.9 176 31.2
arahy.Tifrunner.gnm1.ann1.7W4W3Z Arachis hypogaea HOM05D000001 ORTHO05D000501 1.8e-16 90.5 179 30.7
Phvul.004G064100 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 3.1e-16 89.7 222 30.6
Aqoxy5G04163 Aquilegia oxysepala HOM05D000001 ORTHO05D021353 4.0e-16 89.4 166 33.1
Cfa006668 Carpinus fangiana HOM05D000001 ORTHO05D000501 2.0e-15 87.0 195 33.8
DCAR_031017 Daucus carota HOM05D000001 ORTHO05D000501 2.0e-15 87.0 203 31.5
Aqoxy5G04155 Aquilegia oxysepala HOM05D000001 ORTHO05D000501 4.5e-15 85.9 170 32.4
Glyma.03G194500 Glycine max HOM05D000001 ORTHO05D000501 4.5e-15 85.9 195 30.8
arahy.Tifrunner.gnm1.ann1.4UZ7ZE Arachis hypogaea HOM05D000001 ORTHO05D000501 9.9e-15 84.7 183 29.5
arahy.Tifrunner.gnm1.ann1.E6ZCRX Arachis hypogaea HOM05D000001 ORTHO05D000501 9.9e-15 84.7 180 30.6
Gohir.D06G184400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 9.9e-15 84.7 189 31.7
MD13G1071600 Malus domestica HOM05D000001 ORTHO05D000501 1.3e-14 84.3 203 29.1
Phvul.004G050200 Phaseolus vulgaris HOM05D000001 ORTHO05D000501 3.8e-14 82.8 188 29.3
Psat2g183560 Pisum sativum HOM05D000001 ORTHO05D000501 4.9e-14 82.4 187 28.3
Peaxi162Scf01298g00002 Petunia axillaris HOM05D000001 ORTHO05D000501 6.4e-14 82.0 179 32.4
MD16G1072300 Malus domestica HOM05D000001 ORTHO05D000501 8.4e-14 81.6 196 30.1
Peaxi162Scf00803g00534 Petunia axillaris HOM05D000001 ORTHO05D011474 8.4e-14 81.6 212 26.9
Aqoxy5G02932 Aquilegia oxysepala HOM05D023242 ORTHO05D021350 1.4e-13 80.9 178 29.2
Rhsim12G0135800 Rhododendron simsii HOM05D000001 ORTHO05D000501 1.4e-13 80.9 187 27.3
Gohir.A06G174400 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.9e-13 80.5 189 32.3
Peaxi162Scf01075g00113 Petunia axillaris HOM05D000001 ORTHO05D020963 1.9e-13 80.5 201 30.3
Medtr2g021750 Medicago truncatula HOM05D000172 ORTHO05D004529 2.4e-13 80.1 215 27.0
Medtr2g104300 Medicago truncatula HOM05D000001 ORTHO05D000501 3.2e-13 79.7 116 37.9
Actinidia25576 Actinidia chinensis HOM05D000001 ORTHO05D000501 5.4e-13 79.0 200 27.0
arahy.Tifrunner.gnm1.ann1.VQ1W7S Arachis hypogaea HOM05D000001 ORTHO05D000501 5.4e-13 79.0 180 28.9
BcaB07g30314 Brassica carinata HOM05D000001 ORTHO05D000501 5.4e-13 79.0 203 29.6
Lalb_Chr21g0318791 Lupinus albus HOM05D000001 ORTHO05D000501 5.4e-13 79.0 207 30.0
Cc05_g03730 Coffea canephora HOM05D000001 ORTHO05D000501 7.1e-13 78.6 191 31.4
Dinv25964 Davidia involucrata HOM05D001403 ORTHO05D001313 7.1e-13 78.6 185 26.5
Duzib150G1637 Durio zibethinus HOM05D008337 ORTHO05D000501 7.1e-13 78.6 214 26.6
Gohir.A10G143450 Gossypium hirsutum HOM05D008337 ORTHO05D000501 9.3e-13 78.2 189 27.5
Potri.013G134400 Populus trichocarpa HOM05D000001 ORTHO05D000501 1.2e-12 77.8 176 27.8
MD17G1255600 Malus domestica HOM05D000001 ORTHO05D000501 1.6e-12 77.4 169 30.2
RcHm_v2.0_Chr4g0439741 Rosa chinensis HOM05D000001 ORTHO05D000501 2.1e-12 77.0 207 29.0
RcHm_v2.0_Chr2g0123571 Rosa chinensis HOM05D000001 ORTHO05D000501 2.7e-12 76.6 210 26.2
Sabra10G0128400 Salix brachista HOM05D000001 ORTHO05D000501 2.7e-12 76.6 204 26.0
MSTRG.25466 Avicennia marina HOM05D000001 ORTHO05D000501 3.5e-12 76.3 244 26.2
arahy.Tifrunner.gnm1.ann1.YYPI83 Arachis hypogaea HOM05D000001 ORTHO05D000501 6.0e-12 75.5 187 26.7
TPR.G39233 Trifolium pratense HOM05D000001 ORTHO05D000501 6.0e-12 75.5 203 29.1
Oeu022759.1 Olea europaea HOM05D000001 ORTHO05D000501 7.9e-12 75.1 203 28.1
C02p51020 Brassica napus HOM05D000001 ORTHO05D000501 1.0e-11 74.7 180 30.0
BolC2t11195H Brassica oleracea HOM05D000001 ORTHO05D000501 1.0e-11 74.7 180 30.0
SGA_v2.0_scaffold302G47813 Striga asiatica HOM05D000001 ORTHO05D000501 1.0e-11 74.7 209 28.7
BcaC03g17180 Brassica carinata HOM05D000001 ORTHO05D000501 1.3e-11 74.3 180 30.0
TPR.G40636 Trifolium pratense HOM05D000820 ORTHO05D000501 1.3e-11 74.3 129 35.7
A02p33210 Brassica napus HOM05D000001 ORTHO05D000501 1.8e-11 73.9 180 30.6
BraA02t08345Z Brassica rapa HOM05D000001 ORTHO05D000501 1.8e-11 73.9 180 30.6
FvH4_4g31291 Fragaria vesca HOM05D000001 ORTHO05D000501 1.8e-11 73.9 206 29.1
FAN12G1136 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-11 73.9 206 29.1
Thecc.10G163400 Theobroma cacao HOM05D000001 ORTHO05D000501 1.8e-11 73.9 188 27.7
MD15G1167800 Malus domestica HOM05D000001 ORTHO05D030065 2.3e-11 73.6 211 26.5
Os07g0630400 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 2.3e-11 73.6 235 27.2
FAN22G0330 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.0e-11 73.2 238 28.6
Gohir.A10G143500 Gossypium hirsutum HOM05D000001 ORTHO05D000501 3.0e-11 73.2 228 26.8
Ah.03g135030 Amaranthus hybridus HOM05D000001 ORTHO05D000501 3.9e-11 72.8 176 26.1
Nitab4.5_0002231g0010 Nicotiana tabacum HOM05D010663 ORTHO05D020898 3.9e-11 72.8 203 28.1
unitig_26.g10301 Utricularia gibba HOM05D000001 ORTHO05D000501 5.1e-11 72.4 204 26.5
Aqoxy4G03268 Aquilegia oxysepala HOM05D026885 ORTHO05D026721 6.7e-11 72.0 131 35.1
PGSC0003DMG400026738 Solanum tuberosum HOM05D000001 ORTHO05D000501 8.7e-11 71.6 200 27.0
TWI60G1119 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 8.7e-11 71.6 224 27.2
Actinidia25577 Actinidia chinensis HOM05D000001 ORTHO05D011474 1.1e-10 71.2 168 26.8
CiPaw.03G026000 Carya illinoinensis HOM05D000001 ORTHO05D000501 1.1e-10 71.2 197 28.4
Gohir.A06G174500 Gossypium hirsutum HOM05D000001 ORTHO05D000501 1.5e-10 70.9 189 28.0
Medtr2g021830 Medicago truncatula HOM05D000001 ORTHO05D000501 1.5e-10 70.9 175 27.4
RcHm_v2.0_Chr2g0111611 Rosa chinensis HOM05D000001 ORTHO05D000501 1.5e-10 70.9 202 24.3
arahy.Tifrunner.gnm1.ann1.N8IDFH Arachis hypogaea HOM05D000001 ORTHO05D000501 1.9e-10 70.5 180 28.9
RcHm_v2.0_Chr2g0111581 Rosa chinensis HOM05D000001 ORTHO05D000501 1.9e-10 70.5 202 24.8
EL10Ac2g02457 Beta vulgaris HOM05D000001 ORTHO05D038988 2.5e-10 70.1 202 23.8
EL10Ac2g02459 Beta vulgaris HOM05D000001 ORTHO05D038988 2.5e-10 70.1 202 23.8
Dinv34984 Davidia involucrata HOM05D000001 ORTHO05D000501 3.3e-10 69.7 180 28.3
Dinv34986 Davidia involucrata HOM05D000001 ORTHO05D000501 3.3e-10 69.7 180 28.3
Gohir.A06G174200 Gossypium hirsutum HOM05D000001 ORTHO05D000501 3.3e-10 69.7 188 28.2
Nitab4.5_0003805g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000501 3.3e-10 69.7 179 29.1
arahy.Tifrunner.gnm1.ann1.4JGH0F Arachis hypogaea HOM05D000001 ORTHO05D000501 5.6e-10 68.9 175 28.6
Ciclev10003503m.g Citrus clementina HOM05D000001 ORTHO05D000501 7.4e-10 68.6 200 27.5
Dinv33762 Davidia involucrata HOM05D000425 ORTHO05D000373 7.4e-10 68.6 146 33.6
Peaxi162Scf00746g00027 Petunia axillaris HOM05D030197 ORTHO05D020963 7.4e-10 68.6 194 22.7
Peaxi162Scf02151g00011 Petunia axillaris HOM05D030197 ORTHO05D020963 7.4e-10 68.6 194 23.2
Gorai.011G136200 Gossypium raimondii HOM05D000001 ORTHO05D000501 9.6e-10 68.2 216 26.4
PSO170G1155 Papaver somniferum HOM05D002080 ORTHO05D002062 9.6e-10 68.2 154 31.2
Aqoxy4G01136 Aquilegia oxysepala HOM05D023242 ORTHO05D021350 1.3e-09 67.8 131 30.5
SGA_v2.0_scaffold205G41769 Striga asiatica HOM05D000001 ORTHO05D000501 1.3e-09 67.8 146 28.1
TPR.G13310 Trifolium pratense HOM05D000001 ORTHO05D000501 1.3e-09 67.8 226 26.5
Sed0026554 Sechium edule HOM05D054807 ORTHO05D000501 2.1e-09 67.0 191 28.3
VMungo0251G2849 Vigna mungo HOM05D000001 ORTHO05D000501 2.1e-09 67.0 203 24.6
Sabra08G0064700 Salix brachista HOM05D000001 ORTHO05D000501 2.8e-09 66.6 141 27.7
TWI60G1325 Tripterygium wilfordii HOM05D008337 ORTHO05D000501 2.8e-09 66.6 219 26.9
MD15G1167100 Malus domestica HOM05D000001 ORTHO05D030065 3.7e-09 66.2 194 27.3
Thecc.09G278400 Theobroma cacao HOM05D008337 ORTHO05D000501 3.7e-09 66.2 196 25.5
Medtr6g090200 Medicago truncatula HOM05D000001 ORTHO05D000501 4.8e-09 65.9 179 27.9
Cfa000496 Carpinus fangiana HOM05D000001 ORTHO05D000501 6.2e-09 65.5 207 24.6
Thecc.10G163600 Theobroma cacao HOM05D000001 ORTHO05D000501 6.2e-09 65.5 192 28.1
FvH4_6g07740 Fragaria vesca HOM05D000001 ORTHO05D000501 8.1e-09 65.1 191 28.3
RcHm_v2.0_Chr3g0458491 Rosa chinensis HOM05D000001 ORTHO05D017917 8.1e-09 65.1 204 27.5
Duzib264G0626 Durio zibethinus HOM05D000001 ORTHO05D000501 1.1e-08 64.7 135 28.1
Os07g0629300 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000501 1.1e-08 64.7 133 28.6
Gorai.011G276400 Gossypium raimondii HOM05D001457 ORTHO05D029874 1.4e-08 64.3 196 26.0
Medtr5g097710 Medicago truncatula HOM05D000001 ORTHO05D000501 1.4e-08 64.3 110 29.1
Psat7g143240 Pisum sativum HOM05D068006 ORTHO05D000501 1.4e-08 64.3 126 31.7
RcHm_v2.0_Chr2g0095681 Rosa chinensis HOM05D000001 ORTHO05D016299 1.4e-08 64.3 127 31.5
RcHm_v2.0_Chr3g0457381 Rosa chinensis HOM05D000001 ORTHO05D000501 1.4e-08 64.3 195 24.6
Ciclev10003955m.g Citrus clementina HOM05D000001 ORTHO05D000501 1.8e-08 63.9 185 28.1
MD15G1167600 Malus domestica HOM05D000001 ORTHO05D030065 1.8e-08 63.9 194 26.8
Medtr2g104330 Medicago truncatula HOM05D000001 ORTHO05D000501 1.8e-08 63.9 112 34.8
FAN02G0862 Fragaria x ananassa HOM05D000001 ORTHO05D000501 2.4e-08 63.5 192 28.1
FAN14G3551 Fragaria x ananassa HOM05D000001 ORTHO05D000501 2.4e-08 63.5 191 28.3
TPR.G31836 Trifolium pratense HOM05D000001 ORTHO05D000501 2.4e-08 63.5 152 29.6
AT1G14210 Arabidopsis thaliana HOM05D000001 ORTHO05D000501 6.9e-08 62.0 203 27.1
Psat1g183720 Pisum sativum HOM05D000001 ORTHO05D000501 9.0e-08 61.6 116 27.6
ClCG09G018200 Citrullus lanatus HOM05D000001 ORTHO05D000501 1.2e-07 61.2 173 26.6
Sed0017935 Sechium edule HOM05D000001 ORTHO05D000501 2.0e-07 60.5 177 28.8
ATR0749G096 Amborella trichopoda HOM05D000001 ORTHO05D000501 3.4e-07 59.7 141 24.8
Peaxi162Scf00457g00010 Petunia axillaris HOM05D010663 ORTHO05D011474 4.5e-07 59.3 235 24.3
Gorai.011G281000 Gossypium raimondii HOM05D001457 ORTHO05D000501 5.8e-07 58.9 173 27.2
PSO384G0348 Papaver somniferum HOM05D028390 ORTHO05D021353 1.0e-06 58.2 137 27.0
Duzib150G1132 Durio zibethinus HOM05D000001 ORTHO05D000501 1.3e-06 57.8 105 29.5
MD01G1175200 Malus domestica HOM05D000001 ORTHO05D030065 1.7e-06 57.4 198 24.7
RcHm_v2.0_Chr2g0110251 Rosa chinensis HOM05D017855 ORTHO05D017917 2.2e-06 57.0 102 31.4
Aqoxy7G03524 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 2.9e-06 56.6 201 30.3
Nn4g26000 Nelumbo nucifera HOM05D000001 ORTHO05D000501 3.8e-06 56.2 136 25.7


User provided reference genes

Program Settings