Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 2.4e-37 158.3 79 100.0
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 2.4e-32 141.7 75 90.7
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 4.0e-32 141.0 80 88.8
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 1.2e-31 139.4 78 85.9
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 2.6e-31 138.3 78 84.6
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 5.8e-31 137.1 78 80.8
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 2.2e-30 135.2 77 83.1
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.6e-23 111.7 75 77.3
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 4.2e-21 104.4 77 66.2
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 2.7e-20 101.7 80 62.5
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 6.0e-20 100.5 81 61.7
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 1.0e-19 99.8 76 64.5
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 1.3e-19 99.4 53 84.9
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 1.3e-19 99.4 53 84.9
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 1.7e-19 99.0 76 64.5
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 3.0e-19 98.2 82 56.1
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 5.1e-19 97.4 75 62.7
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 5.1e-19 97.4 78 62.8
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 6.6e-19 97.1 78 64.1
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 6.6e-19 97.1 78 64.1
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 8.7e-19 96.7 73 61.6
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 8.7e-19 96.7 80 60.0
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 1.1e-18 96.3 76 60.5
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 1.1e-18 96.3 76 60.5
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 1.5e-18 95.9 76 61.8
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.9e-18 95.5 78 62.8
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 1.9e-18 95.5 77 58.4
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 2.5e-18 95.1 76 61.8
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 5.6e-18 94.0 82 59.8
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 7.3e-18 93.6 76 60.5
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 7.3e-18 93.6 76 63.2
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 7.3e-18 93.6 77 58.4
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 9.6e-18 93.2 74 60.8
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 9.6e-18 93.2 72 63.9
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 9.6e-18 93.2 78 59.0
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 1.6e-17 92.4 78 61.5
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 2.1e-17 92.0 75 60.0
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 2.8e-17 91.7 72 63.9
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 3.6e-17 91.3 71 62.0
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 3.6e-17 91.3 76 60.5
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 3.6e-17 91.3 81 60.5
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 3.6e-17 91.3 79 55.7
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 4.8e-17 90.9 71 62.0
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 4.8e-17 90.9 75 60.0
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 4.8e-17 90.9 75 58.7
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 1.4e-16 89.4 80 57.5
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.4e-16 88.6 73 58.9
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 4.0e-16 87.8 61 67.2
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 4.0e-16 87.8 78 56.4
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 4.0e-16 87.8 61 65.6
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 5.3e-16 87.4 61 70.5
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 5.3e-16 87.4 74 58.1
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 5.3e-16 87.4 86 55.8
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 6.9e-16 87.0 73 57.5
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 9.0e-16 86.7 71 57.7
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 1.5e-15 85.9 62 66.1
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 2.0e-15 85.5 80 57.5
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 2.0e-15 85.5 71 59.2
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 2.6e-15 85.1 78 52.6
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.6e-15 85.1 70 60.0
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 5.8e-15 84.0 61 63.9
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 7.6e-15 83.6 79 55.7
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 9.9e-15 83.2 79 54.4
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 9.9e-15 83.2 77 55.8
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 1.7e-14 82.4 73 53.4
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 2.9e-14 81.6 58 60.3
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 3.8e-14 81.3 60 61.7
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 3.8e-14 81.3 74 55.4
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 3.8e-14 81.3 71 56.3
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 6.4e-14 80.5 73 53.4
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 8.4e-14 80.1 77 57.1
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 5.4e-13 77.4 62 54.8
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 5.4e-13 77.4 53 58.5
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 7.1e-13 77.0 77 49.4
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 9.3e-13 76.6 75 52.0
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 9.3e-13 76.6 53 62.3
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 1.2e-12 76.3 77 53.2
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 2.1e-12 75.5 59 61.0
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 3.3e-10 68.2 41 68.3
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 9.6e-10 66.6 60 58.3
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 1.3e-09 66.2 64 42.2
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 4.8e-09 64.3 41 70.7
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 1.4e-08 62.8 60 53.3
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 2.4e-08 62.0 53 60.4
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 3.1e-08 61.6 54 53.7
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 1.3e-06 56.2 50 50.0
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 4.9e-06 54.3 48 58.3
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 4.9e-06 54.3 51 56.9
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 8.4e-06 53.5 31 74.2


User provided reference genes

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