Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 6.4e-106 387.5 207 100.0
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 6.0e-96 354.4 204 91.7
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.4e-89 333.2 204 85.8
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 7.2e-89 330.9 204 85.8
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 2.2e-85 319.3 204 80.9
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 2.2e-85 319.3 204 80.9
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 6.3e-85 317.8 206 84.0
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 6.3e-85 317.8 204 80.9
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 1.9e-81 306.2 204 77.9
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 4.4e-78 295.0 202 77.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 3.9e-71 271.9 195 73.3
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 6.7e-71 271.2 203 71.9
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 2.0e-70 269.6 203 70.9
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 5.7e-70 268.1 203 70.0
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 3.7e-69 265.4 205 69.8
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 3.7e-69 265.4 205 71.2
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 4.8e-69 265.0 209 69.4
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 8.2e-69 264.2 204 70.1
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.1e-68 263.8 194 70.6
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.4e-68 263.5 198 70.7
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.8e-68 263.1 201 71.6
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.4e-68 262.7 203 69.5
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.1e-68 262.3 203 69.0
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 4.1e-68 261.9 204 68.6
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.3e-68 261.5 203 68.0
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 7.0e-68 261.2 206 68.4
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.5e-67 258.8 199 71.4
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 4.5e-67 258.5 201 70.6
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 3.8e-66 255.4 205 66.3
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 5.0e-66 255.0 199 70.4
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.0e-66 255.0 186 71.0
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 5.0e-66 255.0 194 69.1
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.5e-65 253.4 191 70.7
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 2.5e-65 252.7 185 70.3
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 4.2e-65 251.9 205 66.8
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 7.2e-65 251.1 199 67.8
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 1.2e-64 250.4 197 68.0
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 2.7e-64 249.2 194 68.0
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 2.7e-64 249.2 199 67.3
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 8.0e-64 247.7 205 66.8
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 8.0e-64 247.7 205 64.4
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.0e-64 247.7 205 64.4
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 8.0e-64 247.7 197 67.0
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.8e-63 246.5 185 70.3
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.8e-63 246.5 205 62.4
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 4.0e-63 245.4 188 70.7
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 2.0e-62 243.0 190 67.9
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.0e-62 243.0 191 65.4
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 4.4e-62 241.9 204 65.7
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 7.5e-62 241.1 193 67.9
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 9.7e-62 240.7 181 71.3
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.2e-61 239.6 202 66.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 4.8e-61 238.4 205 63.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.4e-60 236.9 207 61.8
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.4e-60 236.1 208 64.9
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 3.1e-60 235.7 225 60.0
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 7.7e-59 231.1 182 65.9
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.3e-58 230.3 203 59.1
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 3.8e-58 228.8 200 59.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 3.8e-58 228.8 187 62.6
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 5.0e-58 228.4 195 60.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 8.5e-58 227.6 196 63.8
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 8.5e-58 227.6 186 62.9
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.1e-57 227.3 196 60.2
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.5e-57 226.9 206 60.2
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 1.5e-57 226.9 194 65.5
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 1.9e-57 226.5 178 69.1
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.5e-57 226.1 200 63.5
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.2e-57 225.7 189 64.6
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.2e-57 225.7 189 64.6
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 5.5e-57 224.9 228 55.3
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.2e-56 223.8 196 62.2
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 2.7e-56 222.6 187 61.5
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 5.2e-55 218.4 170 65.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.6e-54 216.1 198 60.6
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 9.8e-54 214.2 201 58.7
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 1.3e-53 213.8 205 56.1
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.3e-53 213.8 189 62.4
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-53 213.8 163 65.6
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 1.7e-53 213.4 205 56.1
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.8e-53 211.8 187 58.3
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 4.8e-53 211.8 148 70.9
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 8.3e-53 211.1 188 59.6
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 8.3e-53 211.1 188 59.6
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 8.3e-53 211.1 188 59.6
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.8e-52 209.9 182 59.3
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.8e-52 209.9 207 56.5
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.4e-52 209.5 190 59.5
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.4e-52 209.5 197 57.4
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.4e-52 209.5 189 61.9
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 7.0e-52 208.0 180 60.0
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 7.0e-52 208.0 200 56.5
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.7e-51 206.1 248 52.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 3.5e-51 205.7 194 55.7
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 7.7e-51 204.5 196 59.2
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.7e-50 203.4 199 57.8
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 5.0e-50 201.8 183 58.5
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.5e-49 200.3 146 71.9
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.5e-49 200.3 200 57.5
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.3e-49 199.1 146 71.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 3.3e-49 199.1 151 64.2
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.5e-49 198.4 139 72.7
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 7.2e-49 198.0 206 55.3
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 2.8e-48 196.1 207 57.0
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.3e-47 193.0 126 77.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 8.9e-47 191.0 138 70.3
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.4e-46 188.7 203 50.7
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 5.0e-42 175.3 176 55.7
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 8.6e-42 174.5 208 51.4
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 4.3e-41 172.2 137 65.0
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 1.0e-39 167.5 136 68.4
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.0e-39 167.5 151 63.6
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.0e-39 167.5 114 72.8
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 6.4e-37 158.3 111 64.9
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 3.9e-34 149.1 122 68.0
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 5.0e-34 148.7 85 90.6
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.1e-31 139.4 113 64.6
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.3e-29 134.0 101 63.4
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.4e-28 130.6 83 78.3
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.2e-28 129.4 83 77.1
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.5e-27 125.9 83 75.9
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.9e-26 122.5 99 65.7
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 7.3e-25 118.2 178 36.5
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 3.6e-24 115.9 206 37.4
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 4.7e-24 115.5 150 48.7
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 8.1e-24 114.8 119 49.6
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 5.2e-23 112.1 108 54.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 9.9e-22 107.8 69 78.3
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.4e-20 104.0 78 66.7
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.9e-20 103.6 217 33.2
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 3.2e-20 102.8 151 43.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 2.1e-19 100.1 66 80.3
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.3e-18 97.4 64 73.4
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.1e-16 90.1 108 40.7
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 1.4e-12 77.4 142 35.2
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 4.0e-07 59.3 82 45.1


User provided reference genes

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