Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 2110.1 1049 100.0
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1880.5 1050 88.9
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1759.6 1049 83.9
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1752.6 1050 82.1
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1743.0 1049 81.4
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1724.5 1051 80.7
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1704.5 1050 79.4
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1686.4 1053 78.0
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1685.6 1057 78.1
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1683.7 1050 78.5
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1679.8 1044 78.9
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1649.4 1050 77.3
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1459.9 1049 66.6
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1453.0 1051 66.3
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1445.3 1050 67.8
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1421.4 1063 66.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1420.6 1043 66.8
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1418.7 1046 64.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1413.3 1053 64.9
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1411.4 1049 65.5
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1409.8 1026 66.6
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1404.4 1053 64.4
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1402.1 1052 65.0
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1400.2 1048 65.4
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1389.8 1052 64.0
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1387.5 1045 64.8
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1385.2 1082 64.7
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1372.1 1046 63.6
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1371.7 1051 64.0
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1370.9 1051 64.3
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1370.5 1050 63.7
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1368.6 1050 62.3
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1367.1 1051 63.9
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1363.6 1054 63.9
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1357.8 1058 63.4
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1349.3 1051 62.6
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1342.8 1046 62.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1335.1 1055 62.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1334.7 1048 62.9
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1334.3 1056 62.2
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1328.5 1051 62.2
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1327.8 1046 61.7
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1052 62.3
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1323.5 1046 61.6
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1323.1 1061 62.3
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1320.8 1046 62.0
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1318.5 1062 62.1
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1316.6 1046 61.2
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1316.2 1049 61.1
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1309.7 1065 59.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1307.0 1047 61.3
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1305.4 1048 60.4
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1304.3 1047 61.2
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1302.3 1066 60.9
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1300.0 1047 61.0
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1299.3 1047 61.0
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1297.3 1091 58.5
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1285.8 1056 59.5
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1283.1 1066 59.0
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1280.8 1010 61.9
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1278.5 1065 58.7
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1080 59.1
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1161 55.8
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1262.7 1089 57.7
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 0.0e+00 1262.3 680 91.0
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1065 59.8
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1260.4 1056 58.1
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1258.4 1088 58.2
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1256.1 1052 58.0
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1254.6 1052 58.4
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1250.0 1055 57.8
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1246.1 1058 58.4
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1243.4 1051 59.7
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1243.4 1099 58.1
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1242.6 1101 56.4
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1214.5 1046 57.9
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1211.8 1046 57.7
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1207.2 1044 57.7
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1201.8 1135 54.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1198.0 1046 57.6
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1184.1 1049 55.5
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1171.4 1053 55.7
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1158.3 1017 55.1
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1157.1 854 65.7
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1146.0 1063 55.4
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1142.5 1052 54.7
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1137.5 1053 55.7
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1118.6 1140 52.5
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1114.0 1038 53.7
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1111.3 1050 52.2
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1106.3 1165 50.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.3e-300 1036.6 867 57.4
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.4e-288 995.3 1018 49.1
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.4e-286 989.9 1049 50.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-279 966.8 994 52.0
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.4e-268 930.2 884 55.7
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 4.7e-245 852.0 1061 44.6
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.8e-236 823.5 1056 42.2
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.7e-216 756.5 731 52.9
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.6e-213 746.1 705 53.8
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.0e-211 740.3 692 52.3
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 8.3e-210 734.9 722 54.0
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 7.3e-198 695.3 833 44.8
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.4e-195 686.0 820 46.3
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.7e-194 684.1 543 63.4
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.7e-191 674.1 1090 36.3
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.6e-184 651.0 664 49.5
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.7e-184 650.2 510 61.2
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.8e-183 647.5 503 60.0
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.2e-178 630.6 863 39.0
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 3.8e-178 629.8 1058 37.8
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 6.9e-172 609.0 524 57.8
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 7.6e-171 605.5 340 86.8
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.2e-170 604.0 595 52.3
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.6e-160 569.7 506 54.7
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.3e-151 540.8 438 61.6
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 7.0e-140 502.7 380 66.3
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 5.4e-116 423.3 857 33.4
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 5.4e-116 423.3 451 46.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.0e-111 407.5 343 60.3
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 3.4e-102 377.5 349 56.4
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.2e-93 348.2 1035 28.4
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.6e-88 332.0 289 63.7
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 3.6e-88 330.9 503 41.2
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 5.8e-78 297.0 366 47.3
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.6e-72 277.7 260 56.2
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-68 266.2 394 40.6
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.6e-67 262.3 154 79.2
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 3.9e-66 257.7 1062 25.3
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 2.5e-65 255.0 212 59.0
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 9.9e-62 243.0 177 66.1
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 2.7e-59 235.0 224 53.6
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.8e-58 232.3 270 47.4
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 7.4e-57 226.9 208 54.8
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.3e-53 216.1 1163 24.3
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 9.7e-49 199.9 319 39.5
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 4.8e-48 197.6 156 67.9
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 2.0e-41 175.6 216 46.3
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 1.3e-40 172.9 126 67.5
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 2.6e-38 165.2 87 89.7
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 3.4e-38 164.9 154 58.4
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-36 159.8 330 32.1
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.2e-36 158.3 193 43.0
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 6.7e-34 150.6 113 65.5
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.7e-27 128.6 71 83.1
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 8.0e-27 127.1 108 61.1
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.3e-25 121.7 116 57.8
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 3.7e-24 118.2 99 58.6
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.8e-23 115.9 69 81.2
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 1.3e-21 109.8 167 37.1
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 3.6e-19 101.7 73 68.5
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 5.7e-17 94.4 99 51.5
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.7e-16 92.8 88 48.9
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 8.5e-13 80.5 104 42.3
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 8.5e-13 80.5 45 82.2
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 6.8e-10 70.9 75 56.0
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-09 70.1 77 50.6
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.0e-06 59.3 42 69.0


User provided reference genes

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