Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 0.0e+00 1308.5 684 100.0
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 5.0e-280 967.6 696 73.0
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.7e-262 908.7 709 68.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.2e-246 856.7 633 70.6
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.6e-206 723.4 706 56.9
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 3.4e-196 689.1 695 53.8
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.9e-195 686.0 719 52.6
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 3.2e-194 682.6 701 54.6
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.5e-188 663.7 718 52.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 6.9e-173 611.7 504 66.1
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.4e-157 560.8 715 46.9
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.5e-156 555.8 507 62.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 8.5e-155 551.6 714 46.4
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 3.2e-154 549.7 709 44.9
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 8.0e-153 545.0 701 45.9
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.0e-152 544.7 710 44.9
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.8e-152 543.9 716 46.2
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.2e-151 541.2 718 44.3
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 2.2e-150 537.0 728 44.6
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 4.8e-150 535.8 722 43.4
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.6e-148 530.8 712 44.9
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 5.0e-147 525.8 719 44.2
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 6.5e-147 525.4 703 44.0
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.1e-146 524.6 719 43.8
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 7.2e-146 521.9 712 44.9
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 9.4e-146 521.5 711 44.9
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.2e-145 521.2 705 43.4
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.2e-145 521.2 719 43.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.7e-145 520.0 725 43.6
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.0e-144 516.2 717 42.4
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 3.1e-141 506.5 729 42.1
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.0e-140 503.8 719 43.0
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.7e-140 503.4 709 43.3
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.0e-139 501.5 703 41.8
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.3e-139 501.1 706 44.2
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.5e-138 497.7 703 42.5
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 5.2e-136 489.2 722 42.4
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 2.2e-134 483.8 708 42.7
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.9e-134 483.4 713 43.2
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 7.0e-133 478.8 700 42.4
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.2e-132 478.0 702 43.0
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 4.6e-132 476.1 723 42.2
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.9e-132 475.7 718 41.5
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 5.0e-131 472.6 703 42.7
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 8.6e-131 471.9 713 41.1
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.5e-130 470.3 705 41.3
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 4.3e-130 469.5 696 41.2
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 5.6e-130 469.2 671 44.4
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 3.6e-129 466.5 693 42.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 4.7e-129 466.1 721 41.2
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 6.8e-128 462.2 699 40.2
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.9e-128 461.8 715 42.0
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.0e-127 460.7 697 40.7
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.4e-127 459.9 711 40.4
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 9.8e-127 458.4 703 39.8
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.7e-126 456.4 647 43.3
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.9e-126 456.1 732 41.1
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 8.3e-126 455.3 709 40.3
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.9e-125 454.1 647 42.5
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 1.9e-125 454.1 707 40.7
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.2e-124 451.4 633 43.0
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.0e-124 450.7 734 39.8
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 2.7e-124 450.3 705 39.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.0e-123 446.8 694 40.5
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.9e-122 444.1 717 40.2
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.3e-122 443.4 709 40.1
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 4.3e-122 443.0 709 39.9
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 5.6e-122 442.6 701 40.2
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.6e-121 441.0 709 40.6
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 4.7e-121 439.5 701 40.2
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.1e-120 438.3 704 40.5
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.5e-119 434.5 771 37.4
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 3.7e-118 429.9 697 40.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.4e-117 427.9 697 39.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.2e-116 424.9 700 38.9
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.0e-115 421.8 705 38.4
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 8.6e-115 418.7 687 37.7
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 8.9e-112 408.7 691 37.9
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.2e-111 408.3 726 39.0
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.2e-110 404.1 669 38.0
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 6.0e-108 396.0 544 42.3
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.0e-107 395.2 680 40.0
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.7e-107 394.4 702 38.5
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.5e-106 391.3 696 36.9
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.6e-105 386.7 701 36.4
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 4.7e-105 386.3 731 37.1
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 6.9e-104 382.5 700 37.0
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.2e-103 381.7 683 37.0
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.6e-103 380.6 715 37.1
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 5.8e-103 379.4 712 36.7
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.9e-102 376.3 690 36.1
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.4e-101 374.0 370 54.9
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 9.3e-101 372.1 708 36.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.0e-99 368.6 634 39.7
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 3.3e-98 363.6 587 39.7
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.4e-96 357.5 574 39.2
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 8.7e-91 339.0 520 41.3
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.6e-89 333.6 851 31.6
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.8e-88 331.3 590 36.6
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 9.9e-87 325.5 490 41.8
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.5e-85 319.7 482 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.1e-84 317.8 736 32.9
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 6.7e-83 312.8 671 33.5
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.5e-82 310.8 506 38.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.1e-81 307.8 748 32.1
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.8e-81 307.4 742 34.0
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.2e-81 306.2 694 33.4
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 9.3e-77 292.4 472 39.0
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.2e-76 292.0 693 31.6
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 6.0e-76 289.7 624 33.7
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 9.6e-74 282.3 456 37.5
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 6.3e-73 279.6 705 31.9
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 6.3e-73 279.6 705 31.9
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 3.6e-68 263.8 364 42.3
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.3e-67 261.9 594 34.3
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.7e-66 256.5 482 36.9
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.8e-65 254.2 383 38.9
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.3e-65 253.1 421 38.2
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 3.4e-63 247.3 483 35.2
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.2e-61 240.7 348 39.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.9e-60 236.1 692 29.8
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 7.9e-60 236.1 643 30.3
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 5.3e-48 196.8 249 46.2
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 6.7e-43 179.9 321 37.7
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.0e-42 178.3 435 31.0
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.3e-38 165.6 248 43.5
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.9e-38 164.5 122 70.5
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.1e-37 162.5 236 40.3
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.7e-36 157.9 217 40.6
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 8.0e-36 156.4 246 42.3
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 6.8e-35 153.3 337 34.1
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.8e-35 152.9 459 29.4
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 5.4e-32 143.7 236 43.6
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.4e-32 143.7 239 38.5
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 3.5e-31 141.0 359 30.4
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.3e-30 138.3 321 33.0
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.1e-29 136.0 238 38.7
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 9.5e-29 132.9 410 28.3
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.8e-28 131.3 233 40.3
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 6.1e-28 130.2 206 35.9
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.0e-27 129.4 183 38.3
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 8.8e-27 126.3 330 31.2
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 2.0e-26 125.2 380 27.9
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 8.9e-19 99.8 359 29.8
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-18 99.0 103 52.4
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.0e-18 98.6 130 40.0
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.7e-17 94.4 196 37.2
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 6.4e-17 93.6 170 37.1
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 6.4e-17 93.6 85 52.9
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.4e-16 91.7 127 40.2
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 2.4e-16 91.7 133 39.8
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 4.1e-16 90.9 128 38.3
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.4e-16 90.5 200 36.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.0e-14 86.3 86 51.2
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-13 82.4 80 52.5
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-13 82.4 154 37.0
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 1.6e-12 79.0 141 33.3
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 3.6e-12 77.8 652 22.5
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 8.0e-12 76.6 625 21.4
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.8e-11 73.6 64 48.4
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.8e-10 70.5 105 39.0
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 9.8e-10 69.7 102 36.3
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.2e-09 68.6 61 54.1
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 7.0e-08 63.5 109 34.9
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 4.6e-07 60.8 132 30.3


User provided reference genes

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