Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 2058.9 1064 100.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1972.2 1075 94.7
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1899.8 1062 92.4
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1892.5 1069 90.6
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1854.3 1070 89.0
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1853.6 1069 89.0
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1840.5 1082 88.0
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1832.8 1071 88.5
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1799.6 1067 87.2
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1790.8 1067 86.3
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1746.5 980 91.8
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1645.6 1072 79.6
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1644.0 1072 79.4
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1636.7 1072 79.9
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1630.2 1072 78.8
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1622.1 1073 78.2
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1620.5 1085 78.2
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1617.8 1075 77.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1615.9 1074 78.0
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1612.0 1078 77.7
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1612.0 1075 78.2
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1605.1 1073 77.7
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1603.2 1072 77.8
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1598.9 1070 77.7
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1593.9 1067 78.4
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1593.2 1072 77.5
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1592.8 1075 77.3
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1592.0 1070 78.4
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1591.6 1076 76.8
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1585.5 1081 76.7
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1580.1 1071 77.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1573.1 1077 76.5
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1563.9 1078 75.3
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1563.9 1029 79.1
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1561.2 1041 78.4
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1559.3 1077 75.3
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1557.3 1073 74.9
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1553.1 1073 74.9
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1534.6 1072 74.3
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1528.8 1074 73.6
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1523.1 1072 74.0
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1513.0 1071 74.1
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1512.3 1079 73.3
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1510.0 1065 74.9
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1506.9 1074 74.4
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1501.5 1071 74.1
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1500.3 1079 73.0
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1495.3 1068 73.8
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1492.2 1076 72.0
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1479.5 1076 71.7
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1070 73.6
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1144 69.2
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1469.1 1085 71.7
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1466.8 1071 71.6
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1466.4 1089 71.0
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1465.7 1071 72.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1461.0 1071 71.4
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1455.3 1091 70.3
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1444.9 1071 71.1
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1444.1 1071 70.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1443.7 1079 70.4
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1441.8 1087 70.5
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1439.5 1087 70.3
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1437.2 1132 69.5
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1434.9 1072 70.7
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1433.3 1080 70.0
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1430.6 1072 70.1
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1428.7 1076 70.0
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1428.7 1094 70.0
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1427.2 1083 69.1
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1426.4 1106 68.6
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1422.5 1064 69.9
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1420.6 1106 68.3
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1409.8 1175 67.2
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1407.9 1074 71.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1406.3 1059 70.2
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1404.0 1083 68.2
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1398.6 1062 72.3
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1396.7 1102 68.7
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1395.9 1059 69.7
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1392.9 1091 68.2
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1386.7 1076 67.8
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1386.3 1075 68.3
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1379.4 996 72.8
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1378.6 1077 67.6
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1373.6 1091 67.7
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1371.3 1150 66.5
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1370.1 1071 68.4
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1369.8 1086 69.3
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1356.7 1109 67.8
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1344.3 1076 67.2
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1340.5 1041 68.8
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1331.2 1060 68.9
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1328.2 950 72.5
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1312.0 1072 66.1
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1299.3 1104 63.6
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1293.9 1068 67.0
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1286.6 1072 63.3
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1284.2 1068 64.1
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1281.9 1173 63.3
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1279.6 1027 66.2
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1260.0 1069 62.5
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1216.8 1255 56.2
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1187.6 888 71.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1179.9 1070 61.1
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1135.6 905 66.6
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1125.9 743 78.3
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1119.0 903 66.9
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 6.1e-301 1037.7 967 60.6
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 1.5e-291 1006.5 1079 52.1
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.7e-290 1003.0 1094 51.3
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 1.2e-288 996.9 724 72.1
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.5e-275 953.4 629 79.0
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 7.3e-270 934.5 1083 48.7
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.7e-261 905.2 843 60.3
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.4e-257 893.6 1072 47.5
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.6e-247 858.2 772 62.8
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 1.1e-246 857.4 1050 47.5
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.3e-238 829.3 586 76.8
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 6.0e-216 755.4 564 72.0
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.1e-214 751.1 513 74.5
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 2.7e-208 729.9 565 69.0
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 3.9e-207 726.1 708 58.5
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 8.8e-199 698.4 531 71.6
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.9e-194 683.3 567 66.0
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 7.7e-187 658.7 807 47.7
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 8.5e-186 655.2 1223 36.5
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.8e-178 629.8 840 47.9
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 3.7e-173 613.2 425 75.1
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 3.1e-164 583.6 348 87.9
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.7e-146 524.6 385 71.7
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 7.1e-140 502.7 374 71.9
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.6e-139 500.0 394 66.0
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 3.9e-130 470.3 281 88.3
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 9.9e-126 455.7 357 69.2
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 8.1e-120 436.0 364 66.5
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 2.4e-119 434.5 318 73.6
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 7.9e-115 419.5 352 66.5
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.3e-112 412.1 269 79.9
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.1e-87 329.3 226 76.5
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.2e-80 305.1 370 49.5
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.4e-71 275.8 193 76.7
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 7.0e-71 273.5 178 78.1
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.7e-59 235.0 162 74.1
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.2e-56 225.3 143 76.2
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.3e-53 216.1 122 86.9
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.1e-52 213.0 133 78.2
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 9.5e-52 209.9 108 93.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 2.2e-48 198.7 137 77.4
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 3.6e-43 181.4 139 64.7
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.5e-41 176.0 104 83.7
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 4.6e-38 164.5 86 88.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.3e-37 162.9 169 53.8
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.4e-34 152.9 95 76.8
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.5e-33 149.4 101 74.3
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 8.3e-32 143.7 111 66.7
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 5.4e-31 141.0 85 80.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.2e-27 129.8 98 68.4
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 6.2e-27 127.5 92 75.0
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.4e-26 126.3 87 66.7
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 6.8e-26 124.0 200 35.0
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 3.4e-25 121.7 177 44.1
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 3.4e-25 121.7 81 75.3
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 3.4e-25 121.7 81 75.3
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 7.6e-25 120.6 79 70.9
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.4e-23 115.5 87 69.0
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-23 115.5 79 64.6
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 8.6e-21 107.1 81 64.2
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 6.8e-18 97.4 99 52.5
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.5e-14 85.1 49 85.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 7.8e-14 84.0 61 70.5
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 7.8e-14 84.0 61 70.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.7e-13 82.8 71 59.2
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 5.1e-13 81.3 48 83.3
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 6.2e-11 74.3 56 64.3
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 5.3e-10 71.2 53 64.2
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 4.4e-09 68.2 49 73.5
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.2e-06 60.1 52 51.9


User provided reference genes

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