Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 1.2e-63 246.9 190 100.0
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 1.2e-63 246.9 190 100.0
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 3.8e-44 182.2 123 76.4
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 1.5e-37 160.2 124 68.5
Medtr5g017550 Medicago truncatula HOM05D000135 ORTHO05D000203 5.5e-35 151.8 93 86.0
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 1.2e-34 150.6 124 66.9
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 2.7e-34 149.4 119 68.1
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 2.7e-34 149.4 115 70.4
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 1.0e-33 147.5 119 66.4
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 1.9e-32 143.3 135 60.0
TPR.G21277 Trifolium pratense HOM05D000135 ORTHO05D000203 1.5e-29 133.7 94 77.7
Medtr5g017540 Medicago truncatula HOM05D000135 ORTHO05D000203 3.4e-29 132.5 84 83.3
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 1.4e-27 127.1 124 60.5
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 8.7e-25 117.9 121 54.5
Psat2g166920 Pisum sativum HOM05D000135 ORTHO05D000203 1.1e-22 110.9 86 70.9
Glyma.05G085200 Glycine max HOM05D000135 ORTHO05D000203 6.9e-22 108.2 124 52.4
arahy.Tifrunner.gnm1.ann1.D3D30P Arachis hypogaea HOM05D000135 ORTHO05D000203 5.9e-21 105.1 115 58.3
Glyma.17G175400 Glycine max HOM05D000135 ORTHO05D000203 7.7e-21 104.8 119 54.6
arahy.Tifrunner.gnm1.ann1.77Y3FG Arachis hypogaea HOM05D000135 ORTHO05D000203 5.0e-20 102.1 114 55.3
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 8.5e-20 101.3 96 57.3
QL06p041758 Quercus lobata HOM05D000135 ORTHO05D000203 1.9e-19 100.1 126 50.0
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 7.2e-19 98.2 92 57.6
arahy.Tifrunner.gnm1.ann1.JMIG5W Arachis hypogaea HOM05D000135 ORTHO05D000203 1.8e-17 93.6 124 47.6
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.1e-16 90.9 131 46.6
MELO3C020900.2 Cucumis melo HOM05D000135 ORTHO05D000203 9.7e-16 87.8 115 43.5
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 2.8e-15 86.3 125 47.2
ClCG02G012820 Citrullus lanatus HOM05D000135 ORTHO05D000203 2.8e-15 86.3 117 42.7
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 2.8e-15 86.3 122 47.5
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 3.7e-15 85.9 95 50.5
CsaV3_2G016890 Cucumis sativus L. HOM05D000135 ORTHO05D000203 3.7e-15 85.9 117 46.2
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 4.8e-15 85.5 123 44.7
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 6.3e-15 85.1 125 45.6
Atru.chr3.341 Acer truncatum HOM05D000135 ORTHO05D000203 8.2e-15 84.7 116 46.6
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 8.2e-15 84.7 123 43.9
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 1.4e-14 84.0 123 42.3
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 1.4e-14 84.0 118 46.6
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 1.4e-14 84.0 123 41.5
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.8e-14 83.6 116 45.7
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.8e-14 83.6 116 45.7
Cfa004516 Carpinus fangiana HOM05D000135 ORTHO05D000203 5.3e-14 82.0 122 45.1
Sed0008130 Sechium edule HOM05D000135 ORTHO05D000203 5.3e-14 82.0 121 43.0
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 6.9e-14 81.6 98 48.0
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 9.1e-14 81.3 91 56.0
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 1.2e-13 80.9 95 50.5
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.5e-13 80.5 111 45.0
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.5e-13 80.5 123 41.5
CANSAT01G1352 Cannabis sativa HOM05D000135 ORTHO05D000203 1.5e-13 80.5 114 42.1
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 2.0e-13 80.1 123 43.9
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 2.6e-13 79.7 123 44.7
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 2.6e-13 79.7 123 43.1
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 2.6e-13 79.7 91 48.4
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 3.4e-13 79.3 123 45.5
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 4.5e-13 79.0 122 41.0
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 4.5e-13 79.0 125 41.6
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.5e-13 79.0 125 41.6
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 4.5e-13 79.0 123 45.5
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.9e-13 78.6 125 41.6
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.9e-13 78.6 125 41.6
Lalb_Chr09g0328311 Lupinus albus HOM05D000135 ORTHO05D000203 5.9e-13 78.6 91 48.4
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 7.7e-13 78.2 118 42.4
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.0e-12 77.8 128 45.3
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 1.0e-12 77.8 125 43.2
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 1.3e-12 77.4 82 54.9
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 1.7e-12 77.0 119 40.3
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 2.2e-12 76.6 124 41.9
AUR62003869 Chenopodium quinoa HOM05D000135 ORTHO05D000203 2.9e-12 76.3 79 54.4
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 5.0e-12 75.5 128 44.5
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 5.0e-12 75.5 125 42.4
Nitab4.5_0001824g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 5.0e-12 75.5 123 40.7
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 1.1e-11 74.3 122 38.5
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 1.1e-11 74.3 123 40.7
Oeu025574.1 Olea europaea HOM05D000135 ORTHO05D000203 1.4e-11 73.9 110 44.5
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 1.4e-11 73.9 122 41.0
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 1.4e-11 73.9 125 42.4
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 1.9e-11 73.6 106 42.5
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 1.9e-11 73.6 116 41.4
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 2.5e-11 73.2 124 40.3
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 3.2e-11 72.8 82 52.4
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 3.2e-11 72.8 84 51.2
Nitab4.5_0000728g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.2e-11 72.8 75 54.7
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 3.2e-11 72.8 108 43.5
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 4.2e-11 72.4 126 42.9
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 4.2e-11 72.4 109 45.0
Lsat_1_v5_gn_5_112780 Lactuca sativa HOM05D000135 ORTHO05D000203 4.2e-11 72.4 109 45.0
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 7.2e-11 71.6 117 42.7
ECA234G2126 Erigeron canadensis HOM05D000135 ORTHO05D000203 7.2e-11 71.6 79 54.4
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 7.2e-11 71.6 123 39.8
Glyma.02G133000 Glycine max HOM05D000135 ORTHO05D000203 9.4e-11 71.2 77 54.5
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 9.4e-11 71.2 111 45.9
Nitab4.5_0000292g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 9.4e-11 71.2 82 47.6
Sabra07G0038000 Salix brachista HOM05D000135 ORTHO05D000203 9.4e-11 71.2 105 46.7
GSVIVG01031752001 Vitis vinifera HOM05D000135 ORTHO05D000203 9.4e-11 71.2 109 45.0
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 1.6e-10 70.5 82 47.6
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 2.1e-10 70.1 126 42.1
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 2.1e-10 70.1 123 40.7
Potri.007G042900 Populus trichocarpa HOM05D000135 ORTHO05D000203 2.7e-10 69.7 105 42.9
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 3.6e-10 69.3 82 47.6
Rhsim05G0109200 Rhododendron simsii HOM05D000135 ORTHO05D000203 3.6e-10 69.3 77 51.9
Sopen02g015130 Solanum pennellii HOM05D000135 ORTHO05D000203 3.6e-10 69.3 86 47.7
PGSC0003DMG402025892 Solanum tuberosum HOM05D000135 ORTHO05D000203 3.6e-10 69.3 82 46.3
SGA_v2.0_scaffold90G27662 Striga asiatica HOM05D000135 ORTHO05D000203 3.6e-10 69.3 124 37.1
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 4.7e-10 68.9 75 53.3
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 6.1e-10 68.6 125 38.4
Ciclev10029994m.g Citrus clementina HOM05D000135 ORTHO05D000203 6.1e-10 68.6 124 37.1
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 7.9e-10 68.2 125 39.2
Gohir.D03G021400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.9e-10 68.2 88 46.6
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.9e-10 68.2 82 46.3
Gorai.003G023100 Gossypium raimondii HOM05D000135 ORTHO05D000203 7.9e-10 68.2 88 46.6
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 7.9e-10 68.2 130 38.5
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.0e-09 67.8 125 36.8
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 1.0e-09 67.8 93 43.0
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 1.0e-09 67.8 93 43.0
MSTRG.15389 Avicennia marina HOM05D000135 ORTHO05D000203 1.8e-09 67.0 92 44.6
PGSC0003DMG400039532 Solanum tuberosum HOM05D000135 ORTHO05D000203 1.8e-09 67.0 99 42.4
Thhalv10022869m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 2.3e-09 66.6 128 40.6
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 2.3e-09 66.6 123 38.2
Solyc02g065000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 2.3e-09 66.6 86 46.5
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 3.0e-09 66.2 125 36.8
SalBow5G1733 Salvia bowleyana HOM05D000135 ORTHO05D000203 3.0e-09 66.2 76 51.3
SalBow5G5503 Salvia bowleyana HOM05D000135 ORTHO05D000203 3.0e-09 66.2 76 51.3
Duzib187G0789 Durio zibethinus HOM05D000135 ORTHO05D000203 3.9e-09 65.9 82 48.8
COL.COLO4_11402 Corchorus olitorius HOM05D000135 ORTHO05D000203 5.1e-09 65.5 93 44.1
Carub.0003s2954 Capsella rubella HOM05D000135 ORTHO05D000203 6.7e-09 65.1 130 36.2
CSS0044479 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 8.8e-09 64.7 93 44.1
Manes.13G127700 Manihot esculenta HOM05D000135 ORTHO05D000203 8.8e-09 64.7 76 51.3
FAN19G0794 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.1e-08 64.3 83 44.6
Thecc.01G054700 Theobroma cacao HOM05D000135 ORTHO05D000203 1.1e-08 64.3 90 43.3
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 1.5e-08 63.9 130 37.7
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 1.5e-08 63.9 130 37.7
Gohir.D11G198300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.5e-08 63.9 82 50.0
Gorai.007G212400 Gossypium raimondii HOM05D000135 ORTHO05D000203 1.5e-08 63.9 82 50.0
Sc18g0004060 Simmondsia chinensis HOM05D000135 ORTHO05D000203 1.5e-08 63.9 86 45.3
Gohir.A11G191800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.0e-08 63.5 92 46.7
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 2.6e-08 63.2 130 37.7
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 2.6e-08 63.2 130 37.7
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 3.3e-08 62.8 123 38.2
Duzib147G1692 Durio zibethinus HOM05D000135 ORTHO05D000203 4.4e-08 62.4 92 45.7
THA.LOC104806864 Tarenaya hassleriana HOM05D000135 ORTHO05D000816 4.4e-08 62.4 117 34.2
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 5.7e-08 62.0 130 36.9
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 5.7e-08 62.0 130 36.9
Thecc.02G100300 Theobroma cacao HOM05D000135 ORTHO05D000203 9.7e-08 61.2 114 37.7
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 1.7e-07 60.5 63 49.2
TWI53G1405 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 2.2e-07 60.1 82 47.6
FvH4_1g15930 Fragaria vesca HOM05D000135 ORTHO05D000203 3.7e-07 59.3 63 47.6
CAN.G1041.20 Capsicum annuum HOM05D000135 ORTHO05D000203 4.8e-07 58.9 124 36.3
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 6.3e-07 58.5 127 35.4
AT5G42380 Arabidopsis thaliana HOM05D000135 ORTHO05D000816 1.1e-06 57.8 117 32.5
AUR62013838 Chenopodium quinoa HOM05D000135 ORTHO05D000203 1.1e-06 57.8 137 33.6
Lj5P209T45 Lonicera japonica HOM05D000135 ORTHO05D000203 3.1e-06 56.2 118 39.0
THA.LOC104801644 Tarenaya hassleriana HOM05D000135 ORTHO05D000816 4.1e-06 55.8 114 33.3
Ah.11g040630 Amaranthus hybridus HOM05D000135 ORTHO05D000203 5.3e-06 55.5 79 45.6
Aqoxy5G01243 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 5.3e-06 55.5 123 37.4
Sed0018642 Sechium edule HOM05D000135 ORTHO05D000203 5.3e-06 55.5 64 43.8
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.0e-06 55.1 123 35.8
Nn5g30257 Nelumbo nucifera HOM05D000135 ORTHO05D000203 9.1e-06 54.7 125 35.2


User provided reference genes

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