Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g017370 Medicago truncatula HOM05D002878 ORTHO05D003649 8.0e-35 149.8 73 100.0
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 2.5e-12 75.1 36 94.4
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 2.5e-12 75.1 36 94.4
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 4.3e-12 74.3 37 89.2
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 7.3e-12 73.6 35 91.4
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 7.3e-12 73.6 36 91.7
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 7.3e-12 73.6 36 91.7
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 7.3e-12 73.6 36 91.7
Gohir.D11G199300 Gossypium hirsutum HOM05D002878 ORTHO05D003649 7.3e-12 73.6 36 91.7
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 7.3e-12 73.6 36 91.7
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 7.3e-12 73.6 36 91.7
Cpa.g.sc55.146 Carica papaya HOM05D002878 ORTHO05D003649 9.5e-12 73.2 36 91.7
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 9.5e-12 73.2 35 94.3
Duzib128G1671 Durio zibethinus HOM05D002878 ORTHO05D003649 9.5e-12 73.2 47 70.2
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 9.5e-12 73.2 36 91.7
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 9.5e-12 73.2 36 88.9
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 9.5e-12 73.2 36 91.7
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 9.5e-12 73.2 35 94.3
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 9.5e-12 73.2 35 94.3
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 1.6e-11 72.4 36 88.9
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 1.6e-11 72.4 36 88.9
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 1.6e-11 72.4 37 89.2
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.6e-11 72.4 37 89.2
FAN26G1304 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.6e-11 72.4 37 89.2
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.6e-11 72.4 37 89.2
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 1.6e-11 72.4 37 89.2
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 1.6e-11 72.4 36 88.9
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 2.1e-11 72.0 36 88.9
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 2.1e-11 72.0 35 91.4
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 2.8e-11 71.6 35 91.4
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 2.8e-11 71.6 35 91.4
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 2.8e-11 71.6 36 88.9
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 3.6e-11 71.2 36 88.9
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 3.6e-11 71.2 36 88.9
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 3.6e-11 71.2 36 88.9
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 3.6e-11 71.2 36 86.1
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 3.6e-11 71.2 36 86.1
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 4.7e-11 70.9 36 88.9
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 6.1e-11 70.5 35 88.6
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 6.1e-11 70.5 35 88.6
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 6.1e-11 70.5 35 88.6
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 6.1e-11 70.5 36 86.1
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 6.1e-11 70.5 36 86.1
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 6.1e-11 70.5 35 88.6
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
Cc07_g06010 Coffea canephora HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
Glyma.01G186202 Glycine max HOM05D002878 ORTHO05D003649 8.0e-11 70.1 34 88.2
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 8.0e-11 70.1 35 88.6
Hma1.2p1_0017F.1_g011360 Hydrangea macrophylla HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 8.0e-11 70.1 36 86.1
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 1.0e-10 69.7 35 88.6
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 1.0e-10 69.7 35 88.6
Dinv39845 Davidia involucrata HOM05D002878 ORTHO05D003649 1.0e-10 69.7 35 88.6
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 1.0e-10 69.7 35 88.6
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 1.0e-10 69.7 35 88.6
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 1.0e-10 69.7 36 83.3
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 1.0e-10 69.7 35 88.6
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
BcaC07g42513 Brassica carinata HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 83.3
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 1.4e-10 69.3 36 86.1
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 1.8e-10 68.9 36 86.1
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 1.8e-10 68.9 36 86.1
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 2.3e-10 68.6 36 86.1
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 2.3e-10 68.6 36 86.1
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 2.3e-10 68.6 37 86.5
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 2.3e-10 68.6 36 86.1
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 2.3e-10 68.6 36 86.1
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 2.3e-10 68.6 36 86.1
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 2.3e-10 68.6 36 86.1
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 2.3e-10 68.6 36 86.1
Zm00001eb423570 Zea mays HOM05D002878 ORTHO05D003649 2.3e-10 68.6 35 88.6
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 3.1e-10 68.2 36 86.1
Ciclev10027323m.g Citrus clementina HOM05D002878 ORTHO05D003649 3.1e-10 68.2 36 83.3
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 3.1e-10 68.2 35 88.6
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 4.0e-10 67.8 36 83.3
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 4.0e-10 67.8 37 81.1
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 4.0e-10 67.8 36 83.3
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 4.0e-10 67.8 35 88.6
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 5.2e-10 67.4 35 85.7
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 5.2e-10 67.4 35 85.7
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 5.2e-10 67.4 35 85.7
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 5.2e-10 67.4 35 85.7
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 5.2e-10 67.4 35 85.7
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 5.2e-10 67.4 36 83.3
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 5.2e-10 67.4 35 85.7
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 5.2e-10 67.4 35 85.7
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 6.8e-10 67.0 35 85.7
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 6.8e-10 67.0 36 83.3
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 6.8e-10 67.0 35 82.9
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 6.8e-10 67.0 35 85.7
CARHR036590 Cardamine hirsuta HOM05D002878 ORTHO05D003649 8.9e-10 66.6 34 82.4
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 8.9e-10 66.6 36 83.3
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 8.9e-10 66.6 35 85.7
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 1.2e-09 66.2 36 80.6
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 1.2e-09 66.2 36 80.6
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 1.2e-09 66.2 36 83.3
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 1.5e-09 65.9 36 83.3
Haze_15395 Corylus avellana HOM05D002878 ORTHO05D003649 1.5e-09 65.9 36 83.3
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 2.0e-09 65.5 36 83.3
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 2.0e-09 65.5 36 83.3
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 2.6e-09 65.1 36 80.6
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 3.4e-09 64.7 35 82.9
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 3.4e-09 64.7 34 82.4
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 4.4e-09 64.3 35 82.9
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 4.4e-09 64.3 36 80.6
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 4.4e-09 64.3 36 80.6
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 7.5e-09 63.5 33 84.8
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 7.5e-09 63.5 36 80.6
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 9.8e-09 63.2 35 80.0
Cre02.g082550 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D003649 2.2e-08 62.0 36 75.0
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 3.7e-08 61.2 36 75.0
CBR_g2783 Chara braunii HOM05D002878 ORTHO05D003649 1.4e-07 59.3 37 75.7
Lsat_1_v5_gn_9_111181 Lactuca sativa HOM05D002878 ORTHO05D003649 2.4e-07 58.5 38 68.4
MBI01_g33890_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 4.1e-07 57.8 38 65.8
QL04p000093 Quercus lobata HOM05D002878 ORTHO05D003649 5.4e-07 57.4 33 75.8
QL04p003128 Quercus lobata HOM05D002878 ORTHO05D003649 5.4e-07 57.4 33 75.8
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 9.2e-07 56.6 32 75.0
Potri.001G229100 Populus trichocarpa HOM05D002878 ORTHO05D003649 1.2e-06 56.2 32 75.0
TAR633G2681 Trochodendron aralioides HOM05D002878 ORTHO05D003649 1.2e-06 56.2 32 75.0
vmacro13619 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 1.2e-06 56.2 31 77.4
Actinidia31701 Actinidia chinensis HOM05D002878 ORTHO05D003649 1.6e-06 55.8 31 77.4
ATR0605G380 Amborella trichopoda HOM05D002878 ORTHO05D003649 1.6e-06 55.8 34 70.6
Glyma.09G000600 Glycine max HOM05D002878 ORTHO05D003649 2.0e-06 55.5 32 78.1
PSO384G3105 Papaver somniferum HOM05D002878 ORTHO05D003649 2.0e-06 55.5 34 64.7
Phvul.011G214600 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 2.0e-06 55.5 32 75.0
VMungo1127G0209 Vigna mungo HOM05D002878 ORTHO05D003649 2.0e-06 55.5 32 75.0
Medtr4g022850 Medicago truncatula HOM05D002878 ORTHO05D003649 2.7e-06 55.1 32 75.0
DCAR_015695 Daucus carota HOM05D002878 ORTHO05D003649 3.5e-06 54.7 32 71.9
HanXRQChr04g0117341 Helianthus annuus HOM05D002878 ORTHO05D003649 3.5e-06 54.7 31 74.2
CSS0041624 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 6.0e-06 53.9 41 65.9
GSVIVG01001372001 Vitis vinifera HOM05D002878 ORTHO05D003649 6.0e-06 53.9 32 75.0
Lj9A623T47 Lonicera japonica HOM05D002878 ORTHO05D003649 7.8e-06 53.5 29 79.3


User provided reference genes

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