Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 4.0e-103 378.3 212 100.0
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 1.2e-99 366.7 212 89.6
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 4.6e-99 364.8 212 89.2
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 1.0e-90 337.0 212 87.3
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 3.0e-90 335.5 212 88.2
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 3.9e-90 335.1 207 89.9
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 9.6e-89 330.5 212 87.3
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 4.8e-88 328.2 212 85.8
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 8.1e-88 327.4 202 90.1
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 4.6e-83 311.6 211 84.4
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 1.1e-81 307.0 211 83.4
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 4.8e-80 301.6 209 73.2
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 2.4e-79 299.3 207 80.2
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 2.0e-78 296.2 210 78.6
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 2.0e-78 296.2 210 78.6
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 5.8e-78 294.7 207 79.2
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 5.8e-78 294.7 210 76.2
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 7.6e-78 294.3 207 69.6
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 1.3e-77 293.5 210 79.0
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 2.9e-77 292.4 210 76.2
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 2.9e-77 292.4 210 78.1
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.9e-77 292.4 207 76.3
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.8e-77 292.0 210 76.7
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 4.9e-77 291.6 210 76.7
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.4e-76 290.0 210 77.6
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.4e-76 290.0 210 77.6
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.4e-76 290.0 210 76.7
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 1.4e-76 290.0 209 76.6
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.9e-76 289.7 210 77.1
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 2.4e-76 289.3 209 75.6
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 3.2e-76 288.9 210 77.1
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 3.2e-76 288.9 210 77.1
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 4.2e-76 288.5 207 74.4
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 4.2e-76 288.5 210 76.2
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 4.2e-76 288.5 207 77.8
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 4.2e-76 288.5 207 67.6
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 5.4e-76 288.1 207 75.4
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 9.3e-76 287.3 208 65.4
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 2.1e-75 286.2 210 75.7
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.5e-75 285.4 210 70.5
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 3.5e-75 285.4 210 70.5
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 4.6e-75 285.0 210 74.3
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 4.6e-75 285.0 210 75.2
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.3e-74 283.5 210 76.2
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.3e-74 282.7 207 75.4
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 3.0e-74 282.3 212 65.1
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 8.7e-74 280.8 207 67.6
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 1.5e-73 280.0 210 65.7
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 2.5e-73 279.3 219 71.7
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 2.5e-73 279.3 207 74.9
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 4.3e-73 278.5 207 71.5
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 4.3e-73 278.5 210 75.2
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 7.4e-73 277.7 207 74.4
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 1.3e-72 276.9 209 65.1
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.3e-72 276.9 207 64.7
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 6.2e-72 274.6 210 70.5
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 8.1e-72 274.2 207 73.9
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 4.0e-71 271.9 207 63.8
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 6.9e-71 271.2 207 70.0
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 9.0e-71 270.8 210 72.9
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 1.2e-70 270.4 207 75.4
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 1.5e-70 270.0 207 63.3
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 1.5e-70 270.0 165 76.4
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 2.0e-70 269.6 207 73.4
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 2.0e-70 269.6 207 73.4
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 2.0e-70 269.6 210 72.4
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 3.4e-70 268.9 210 72.4
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 3.4e-70 268.9 210 71.9
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 5.8e-70 268.1 206 72.3
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 7.6e-70 267.7 210 72.4
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 7.6e-70 267.7 210 72.4
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 7.6e-70 267.7 207 68.6
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 1.0e-69 267.3 210 72.4
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 1.0e-69 267.3 208 68.8
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 1.0e-69 267.3 210 62.4
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 1.0e-69 267.3 204 73.0
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 1.3e-69 266.9 204 73.5
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 1.7e-69 266.5 204 72.5
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 1.7e-69 266.5 204 72.5
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 2.2e-69 266.2 209 64.6
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 3.8e-69 265.4 209 60.8
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 4.9e-69 265.0 206 71.4
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 6.5e-69 264.6 210 71.9
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 6.5e-69 264.6 210 71.9
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 1.4e-68 263.5 207 72.0
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 1.9e-68 263.1 207 72.0
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 2.5e-68 262.7 210 71.0
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 2.5e-68 262.7 210 69.0
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 3.2e-68 262.3 209 61.7
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 4.2e-68 261.9 190 76.8
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 4.2e-68 261.9 207 71.5
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 7.1e-68 261.2 207 71.5
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 9.3e-68 260.8 208 69.7
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 2.1e-67 259.6 207 71.5
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 2.1e-67 259.6 207 70.0
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 1.3e-66 256.9 261 52.1
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 1.3e-66 256.9 215 58.6
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 2.3e-66 256.1 167 71.3
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 1.9e-65 253.1 207 67.1
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 2.5e-65 252.7 210 68.1
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 4.3e-65 251.9 184 76.6
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 9.6e-65 250.8 209 58.9
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 2.8e-64 249.2 210 67.1
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 5.3e-63 245.0 207 68.1
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 3.2e-60 235.7 204 60.3
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 3.0e-58 229.2 209 53.6
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 7.4e-57 224.6 198 60.1
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 1.6e-56 223.4 208 53.8
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 1.5e-54 216.9 210 55.2
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 1.7e-48 196.8 207 61.4
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 6.3e-48 194.9 203 56.2
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 4.5e-46 188.7 165 57.0
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 1.7e-45 186.8 167 53.9
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 7.9e-43 177.9 167 52.7
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 2.4e-39 166.4 209 53.6
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 3.0e-34 149.4 156 46.2
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 4.0e-34 149.1 135 51.9
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.4e-31 140.6 96 72.9
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 5.2e-18 95.5 81 58.0
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 1.4e-15 87.4 86 70.9
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 1.2e-14 84.3 44 84.1
Medtr5g016930 Medicago truncatula HOM05D006615 ORTHO05D007999 3.4e-09 66.2 55 63.6
Sc03g0001840 Simmondsia chinensis HOM05D001905 ORTHO05D001820 1.4e-07 60.8 158 31.0
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.4e-07 60.1 108 33.3
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.4e-07 60.1 109 33.9
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 5.4e-07 58.9 94 34.0
COL.COLO4_11476 Corchorus olitorius HOM05D001905 ORTHO05D001820 5.4e-07 58.9 150 30.0
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 5.4e-07 58.9 52 55.8
Duzib264G1203 Durio zibethinus HOM05D001905 ORTHO05D001820 9.2e-07 58.2 151 31.8
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 1.2e-06 57.8 164 27.4
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 1.6e-06 57.4 109 33.0
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-06 57.4 109 33.0
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 2.0e-06 57.0 151 29.1
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 2.0e-06 57.0 164 28.0
FAN27G2375 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.7e-06 56.6 186 27.4
Gohir.A02G155300 Gossypium hirsutum HOM05D001905 ORTHO05D001820 2.7e-06 56.6 158 30.4
Carub.0006s3341 Capsella rubella HOM05D000710 ORTHO05D000336 3.5e-06 56.2 164 29.9
FAN19G1902 Fragaria x ananassa HOM05D000710 ORTHO05D000336 3.5e-06 56.2 164 27.4
Duzib147G0099 Durio zibethinus HOM05D001905 ORTHO05D001820 4.6e-06 55.8 150 31.3
Sed0020917 Sechium edule HOM05D001905 ORTHO05D001820 4.6e-06 55.8 158 29.7


User provided reference genes

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