Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 4.1e-72 274.6 138 100.0
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 2.5e-61 238.8 140 89.3
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 3.6e-60 235.0 140 87.9
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.5e-58 229.6 145 84.8
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.5e-55 219.5 145 80.7
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.0e-55 219.2 144 81.2
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 7.7e-55 217.2 144 80.6
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 81.2
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.3e-54 216.5 144 79.9
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 5.5e-53 211.1 147 75.5
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 1.6e-52 209.5 147 74.8
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 4.7e-52 208.0 142 77.5
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 6.1e-52 207.6 145 77.2
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 6.1e-52 207.6 144 77.1
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.0e-51 206.8 141 77.3
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.4e-51 206.5 141 77.3
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.8e-51 206.1 146 76.7
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 2.3e-51 205.7 141 76.6
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 2.3e-51 205.7 141 76.6
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.0e-51 205.3 144 75.7
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 3.0e-51 205.3 147 74.8
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 3.0e-51 205.3 138 74.6
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 3.9e-51 204.9 152 72.4
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 5.2e-51 204.5 146 74.7
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 5.2e-51 204.5 143 75.5
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 6.7e-51 204.1 143 76.2
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 8.8e-51 203.8 140 75.0
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 8.8e-51 203.8 144 75.0
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.1e-50 203.4 144 73.6
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.1e-50 203.4 140 75.0
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.1e-50 203.4 141 75.9
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 1.5e-50 203.0 144 75.0
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.5e-50 203.0 146 74.0
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 2.6e-50 202.2 143 75.5
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 3.3e-50 201.8 147 73.5
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.4e-50 201.4 143 74.8
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 4.4e-50 201.4 142 75.4
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 5.7e-50 201.1 144 72.9
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 5.7e-50 201.1 139 74.8
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 9.7e-50 200.3 144 72.2
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 9.7e-50 200.3 146 71.9
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 1.3e-49 199.9 143 75.5
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.3e-49 199.9 148 70.9
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.3e-49 199.9 148 70.9
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.3e-49 199.9 148 70.9
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.7e-49 199.5 146 71.9
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 3.7e-49 198.4 144 72.2
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 4.8e-49 198.0 143 72.7
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 6.3e-49 197.6 147 74.1
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 6.3e-49 197.6 143 72.7
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.3e-49 197.6 144 72.2
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 8.2e-49 197.2 145 75.9
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 8.2e-49 197.2 145 75.9
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.1e-48 196.8 145 73.8
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.4e-48 196.4 138 76.8
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.4e-48 196.4 147 70.1
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.4e-48 196.4 145 70.3
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 1.4e-48 196.4 142 71.8
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.4e-48 196.4 142 73.2
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.4e-48 196.4 146 74.0
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 1.8e-48 196.1 171 64.3
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 1.8e-48 196.1 145 72.4
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 1.8e-48 196.1 145 72.4
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 2.4e-48 195.7 145 70.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 3.1e-48 195.3 144 72.9
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.1e-48 195.3 145 71.7
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 4.1e-48 194.9 144 70.1
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 4.1e-48 194.9 144 72.9
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 4.1e-48 194.9 140 72.1
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 4.1e-48 194.9 145 71.7
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 5.3e-48 194.5 117 82.1
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 5.3e-48 194.5 132 76.5
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 5.3e-48 194.5 148 69.6
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 7.0e-48 194.1 144 70.1
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.2e-47 193.4 138 75.4
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.2e-47 193.4 148 69.6
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 1.6e-47 193.0 140 70.0
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.6e-47 193.0 145 70.3
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 2.0e-47 192.6 140 72.1
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.0e-47 192.6 140 72.1
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.0e-47 192.6 139 74.1
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 2.0e-47 192.6 141 74.5
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 2.0e-47 192.6 138 72.5
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.6e-47 192.2 130 76.2
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 2.6e-47 192.2 147 69.4
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.6e-47 192.2 145 71.7
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.5e-47 191.8 146 69.9
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 3.5e-47 191.8 148 72.3
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.5e-47 191.8 143 72.0
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.9e-47 191.0 144 70.1
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 7.7e-47 190.7 141 71.6
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 7.7e-47 190.7 110 87.3
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 7.7e-47 190.7 140 72.1
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 7.7e-47 190.7 140 72.1
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 2.2e-46 189.1 110 87.3
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.2e-46 189.1 141 70.9
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.8e-46 188.3 143 72.0
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 8.5e-46 187.2 152 67.8
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 8.5e-46 187.2 147 70.1
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.5e-45 186.4 145 71.0
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.5e-45 186.4 131 75.6
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.5e-45 186.4 110 85.5
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 1.5e-45 186.4 110 85.5
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.5e-45 186.4 145 70.3
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 1.5e-45 186.4 143 69.9
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 4.2e-45 184.9 146 67.1
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 4.2e-45 184.9 137 70.1
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 5.5e-45 184.5 110 84.5
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 5.5e-45 184.5 146 69.9
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 2.1e-44 182.6 106 84.9
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.1e-44 182.6 165 62.4
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 2.1e-44 182.6 145 69.7
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 6.1e-44 181.0 133 72.9
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.1e-44 181.0 110 80.9
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 4.0e-43 178.3 141 68.8
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.2e-43 177.9 118 81.4
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 5.2e-43 177.9 139 68.3
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.2e-42 176.8 118 79.7
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 3.4e-42 175.3 112 77.7
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 8.3e-41 170.6 222 50.5
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 7.0e-40 167.5 91 90.1
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.2e-39 166.8 172 56.4
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.6e-39 166.4 90 90.0
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 2.7e-39 165.6 92 88.0
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.5e-37 159.8 173 53.8
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 2.5e-37 159.1 88 87.5
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.8e-35 152.9 105 76.2
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 8.8e-35 150.6 107 72.9
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.6e-31 139.8 138 55.1
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 3.5e-31 138.7 109 67.0
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 2.9e-30 135.6 140 54.3
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.0e-27 127.1 98 70.4
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 1.3e-25 120.2 108 58.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 6.3e-25 117.9 63 93.7
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 8.3e-25 117.5 112 59.8
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.3e-22 109.4 144 50.7
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 6.6e-22 107.8 87 57.5
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-20 103.2 60 86.7
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 2.1e-20 102.8 73 67.1
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 2.3e-19 99.4 89 59.6
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 3.2e-16 89.0 103 41.7
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.9e-13 79.7 81 50.6
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.5e-13 79.3 63 61.9
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.6e-12 76.6 111 42.3
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 8.9e-11 70.9 48 72.9
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.4e-08 63.5 83 43.4
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 3.2e-08 62.4 35 85.7
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 2.7e-07 59.3 43 69.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 2.7e-07 59.3 43 69.8
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 2.7e-07 59.3 113 38.1
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 6.6e-06 54.7 29 82.8


User provided reference genes

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