Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.7e-265 918.7 440 100.0
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.6e-245 851.7 436 92.2
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 4.2e-240 834.3 440 90.2
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 1.8e-238 828.9 433 89.4
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.2e-236 822.0 434 88.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.4e-235 817.4 430 88.8
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.4e-235 817.4 430 88.8
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.7e-233 812.4 433 87.8
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.0e-233 810.8 433 86.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 6.6e-233 810.4 433 87.5
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 3.3e-232 808.1 434 87.1
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.2e-229 799.7 434 85.9
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.4e-229 798.1 436 85.3
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.4e-229 797.7 435 85.1
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 7.5e-229 797.0 433 86.4
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 7.5e-229 797.0 436 85.6
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.7e-228 795.8 440 83.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.2e-228 795.4 436 84.6
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.4e-227 792.0 435 84.4
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.7e-226 788.5 453 81.5
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 3.5e-226 788.1 431 84.7
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.0e-225 786.6 436 84.9
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.0e-225 786.6 436 85.3
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.0e-225 786.6 436 85.3
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.7e-225 785.8 436 85.6
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.3e-225 785.4 436 83.5
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.9e-225 785.0 429 85.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 3.8e-225 784.6 436 84.2
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.5e-224 782.7 431 85.4
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.5e-224 782.7 431 84.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 4.3e-224 781.2 439 82.2
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 9.5e-224 780.0 431 83.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.2e-223 779.6 431 83.8
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.8e-223 778.5 431 83.3
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.8e-223 778.5 431 83.1
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.6e-223 778.1 431 83.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 4.0e-222 774.6 430 83.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.4e-221 771.5 429 84.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 5.8e-221 770.8 431 81.9
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 6.4e-220 767.3 437 81.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.4e-219 766.1 438 81.3
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.4e-219 764.2 436 81.2
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 7.0e-219 763.8 436 81.0
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 7.0e-219 763.8 436 80.0
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.2e-218 763.1 433 83.4
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.7e-218 761.9 436 81.2
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.5e-218 761.5 434 80.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.3e-217 759.6 469 77.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.9e-217 758.1 431 81.0
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.6e-217 757.3 430 81.9
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.1e-216 756.5 430 81.2
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 1.5e-216 756.1 439 79.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.9e-216 755.7 439 79.5
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 3.3e-216 755.0 438 80.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 7.3e-216 753.8 432 80.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 7.3e-216 753.8 432 80.3
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 7.3e-216 753.8 431 80.7
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 9.5e-216 753.4 431 81.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 2.1e-215 752.3 436 80.0
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 4.7e-215 751.1 432 79.9
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 4.7e-215 751.1 430 79.8
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 8.0e-215 750.4 436 78.7
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.1e-214 750.0 432 79.6
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.4e-214 749.6 437 79.9
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.8e-214 749.2 438 79.2
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.8e-214 749.2 430 80.7
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 5.2e-214 747.7 430 79.8
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 8.9e-214 746.9 436 78.9
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.0e-213 745.7 497 70.8
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.4e-213 745.0 431 80.0
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 4.4e-213 744.6 438 78.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 4.4e-213 744.6 431 79.1
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.4e-213 744.6 440 79.5
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.8e-213 744.2 428 81.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.5e-213 743.8 439 78.4
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 3.7e-212 741.5 440 78.6
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.9e-211 739.2 445 78.0
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 7.8e-210 733.8 431 78.9
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 7.8e-210 733.8 429 77.6
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 5.1e-209 731.1 440 75.9
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.1e-208 729.9 416 83.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 5.6e-208 727.6 434 76.7
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 6.8e-206 720.7 500 70.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 6.4e-204 714.1 431 76.3
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 4.1e-203 711.4 526 66.7
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.2e-202 709.9 398 83.7
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.7e-202 708.8 406 81.3
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 5.1e-201 704.5 412 80.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 5.2e-198 694.5 385 83.9
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 5.4e-195 684.5 430 73.7
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 9.2e-195 683.7 404 77.7
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.6e-194 681.4 430 73.3
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 5.1e-193 677.9 431 73.8
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.6e-192 674.5 427 73.8
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 5.3e-190 667.9 436 70.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.4e-187 659.8 445 68.1
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.2e-186 656.8 430 71.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.9e-185 651.7 431 71.9
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.5e-184 649.8 425 70.8
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 4.3e-184 648.3 436 69.3
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.3e-184 647.5 431 69.4
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 4.8e-183 644.8 427 69.8
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.4e-179 633.3 434 66.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.4e-179 632.5 340 86.2
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.5e-178 628.6 431 70.8
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 3.3e-176 622.1 339 86.1
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.6e-173 612.5 329 85.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.7e-172 609.8 427 66.7
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.9e-171 606.3 437 63.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.5e-170 602.1 433 64.4
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 7.9e-170 600.9 388 74.2
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 3.9e-169 598.6 333 83.2
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.7e-164 583.2 354 77.4
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.4e-163 580.1 432 62.7
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.7e-161 571.2 432 66.2
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.7e-161 570.9 440 61.6
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.5e-160 570.1 440 61.6
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 6.9e-158 561.2 425 60.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.6e-154 548.9 439 60.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 2.0e-152 543.1 296 84.8
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.8e-143 512.7 335 71.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.8e-143 511.9 428 58.2
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.5e-141 506.9 382 65.7
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 8.5e-140 501.1 353 66.6
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 4.1e-126 455.7 431 51.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.6e-117 427.2 241 83.4
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.0e-112 410.2 352 59.4
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.0e-105 387.9 221 82.4
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 8.6e-100 368.2 239 74.1
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.4e-78 295.8 157 87.9
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.6e-77 294.3 185 73.5
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.3e-73 279.3 176 73.3
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.9e-68 263.1 197 66.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 5.6e-67 259.2 145 82.8
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-59 235.0 134 81.3
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 8.1e-58 228.8 227 55.1
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-49 201.4 112 82.1
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.5e-48 196.4 107 77.6
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.4e-41 174.1 137 63.5
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.2e-38 163.3 93 82.8
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.5e-38 162.9 88 84.1
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.7e-34 150.2 165 49.1
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.1e-33 145.6 82 84.1
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 5.9e-32 142.9 204 38.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 9.7e-27 125.6 78 74.4
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.2e-23 114.4 242 34.3
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-22 110.5 67 71.6
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 3.6e-21 107.1 57 75.4
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 3.0e-20 104.0 62 79.0
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.6e-19 100.9 72 58.3
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 6.5e-15 86.3 121 43.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.1e-14 85.5 94 50.0
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.6e-13 80.5 38 84.2
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.7e-10 71.6 35 88.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 4.8e-10 70.1 81 45.7
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 2.2e-07 61.2 69 50.7
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 9.4e-06 55.8 35 65.7


User provided reference genes

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