Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 5.2e-79 297.7 160 100.0
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 9.5e-49 197.2 170 64.1
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 2.6e-46 189.1 171 66.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 7.8e-35 151.0 170 54.7
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.8e-35 151.0 170 52.4
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 3.9e-34 148.7 170 51.2
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 3.9e-34 148.7 170 51.2
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 1.6e-32 143.3 170 51.2
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 8.1e-32 141.0 170 49.4
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.1e-31 139.0 170 45.3
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 5.3e-31 138.3 170 47.6
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 5.3e-31 138.3 169 50.9
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 2.6e-30 136.0 170 46.5
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.4e-30 135.6 170 49.4
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 5.8e-30 134.8 170 46.5
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 9.9e-30 134.0 173 47.4
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.7e-29 133.3 170 47.1
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 2.2e-29 132.9 170 45.3
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.9e-29 132.5 170 47.1
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 3.8e-29 132.1 172 49.4
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 8.4e-29 131.0 164 48.8
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.9e-28 129.8 161 49.1
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.9e-28 129.8 160 46.9
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.2e-28 129.0 161 49.7
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 5.4e-28 128.3 171 50.3
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 9.3e-28 127.5 169 46.2
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 9.3e-28 127.5 169 47.9
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 9.3e-28 127.5 170 50.6
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-27 127.1 161 44.7
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.6e-27 126.7 171 43.3
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-27 126.3 171 43.3
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.5e-27 125.6 161 44.7
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.6e-27 125.2 162 45.1
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.0e-27 124.8 174 46.0
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 6.0e-27 124.8 170 44.7
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 7.9e-27 124.4 171 42.7
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 7.9e-27 124.4 171 43.3
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.3e-26 123.6 171 42.1
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.8e-26 123.2 171 42.7
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.8e-26 123.2 171 42.7
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.3e-26 122.9 171 44.4
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 2.3e-26 122.9 170 45.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.3e-26 122.9 173 42.2
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 3.0e-26 122.5 173 41.6
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.9e-26 122.1 171 43.3
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.9e-26 122.1 170 41.2
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 5.1e-26 121.7 163 44.8
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 6.7e-26 121.3 171 43.3
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 8.7e-26 120.9 171 42.7
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.1e-25 120.6 170 41.8
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 1.5e-25 120.2 169 46.2
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.9e-25 119.8 177 41.8
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.3e-25 118.6 171 41.5
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.3e-24 117.1 172 41.9
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.3e-24 117.1 172 41.9
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.3e-24 117.1 170 42.9
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 1.3e-24 117.1 177 41.8
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.8e-24 115.9 166 44.6
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 6.2e-24 114.8 170 42.4
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 8.1e-24 114.4 170 42.4
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.4e-23 113.6 172 41.3
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.8e-23 113.2 177 40.7
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 2.4e-23 112.8 166 42.2
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 3.1e-23 112.5 170 41.8
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 4.0e-23 112.1 177 38.4
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 4.0e-23 112.1 172 41.9
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 9.0e-23 110.9 207 37.2
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.5e-22 110.2 169 43.8
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.0e-22 109.8 173 37.6
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.0e-22 109.8 171 40.9
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.4e-22 109.0 160 38.1
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 3.4e-22 109.0 176 39.8
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.3e-21 107.1 148 43.9
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.9e-21 105.9 170 40.0
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.9e-21 105.9 167 40.1
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.8e-21 105.5 170 39.4
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 4.9e-21 105.1 147 42.2
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 6.4e-21 104.8 172 39.5
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 6.4e-21 104.8 169 39.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 6.4e-21 104.8 147 42.9
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.1e-20 104.0 174 40.2
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.1e-20 104.0 226 38.5
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.4e-20 103.6 170 39.4
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.4e-20 103.6 170 40.0
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.5e-20 102.8 171 38.6
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 4.2e-20 102.1 148 41.2
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 5.5e-20 101.7 148 41.2
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 5.5e-20 101.7 164 37.2
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 5.5e-20 101.7 195 36.4
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 7.1e-20 101.3 149 43.0
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 7.1e-20 101.3 167 37.7
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 7.1e-20 101.3 165 38.2
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 9.3e-20 100.9 147 40.8
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 9.3e-20 100.9 147 40.8
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 9.3e-20 100.9 274 29.9
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 9.3e-20 100.9 168 38.7
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.6e-19 100.1 116 47.4
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.1e-19 99.8 168 42.9
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 2.1e-19 99.8 168 41.1
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.7e-19 99.4 120 47.5
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.5e-19 99.0 173 46.2
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.5e-19 99.0 150 42.0
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 4.6e-19 98.6 168 43.5
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.6e-19 98.6 171 37.4
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 6.0e-19 98.2 171 38.0
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.3e-18 97.1 171 36.8
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.3e-18 97.1 196 35.2
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 1.8e-18 96.7 171 38.6
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 2.3e-18 96.3 148 41.9
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 3.9e-18 95.5 114 45.6
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 3.9e-18 95.5 170 36.5
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 3.9e-18 95.5 169 42.0
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 5.1e-18 95.1 148 40.5
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 5.1e-18 95.1 173 37.0
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 5.1e-18 95.1 169 36.1
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 5.1e-18 95.1 169 36.1
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 6.7e-18 94.7 148 41.2
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 6.7e-18 94.7 148 41.2
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.1e-17 94.0 170 38.2
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.5e-17 93.6 148 41.2
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 3.3e-17 92.4 149 40.3
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 4.3e-17 92.0 168 37.5
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 7.4e-17 91.3 147 39.5
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 7.4e-17 91.3 249 31.7
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 9.6e-17 90.9 169 37.9
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 9.6e-17 90.9 168 34.5
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 2.1e-16 89.7 174 35.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.7e-16 89.0 168 35.1
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.7e-16 89.0 147 40.1
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 6.2e-16 88.2 171 42.1
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.4e-15 87.0 169 36.7
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 4.0e-15 85.5 177 38.4
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 6.9e-15 84.7 227 30.0
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.5e-14 83.6 151 39.1
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.5e-14 83.6 98 46.9
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.6e-14 82.8 77 53.2
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.4e-14 82.4 107 43.9
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 7.6e-14 81.3 79 49.4
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 7.6e-14 81.3 211 31.8
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.7e-13 80.1 171 31.6
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 4.9e-13 78.6 171 32.7
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.4e-12 77.0 158 36.1
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.4e-12 77.0 187 31.0
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.7e-11 72.8 80 46.2
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 7.9e-11 71.2 81 43.2
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 7.9e-11 71.2 71 50.7
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 3.9e-10 68.9 91 45.1
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 5.7e-09 65.1 154 35.1
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 7.4e-09 64.7 72 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 2.2e-08 63.2 98 40.8
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 8.2e-08 61.2 76 39.5
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.1e-07 58.9 153 32.7


User provided reference genes

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