Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 8.6e-267 923.3 545 100.0
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 2.4e-237 825.5 545 91.2
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.0e-211 740.3 545 84.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.6e-209 733.0 530 83.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.6e-209 733.0 530 83.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 3.1e-200 702.2 535 78.7
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.4e-195 686.8 535 80.0
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 8.2e-193 677.6 535 78.1
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.9e-189 666.4 557 73.6
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.2e-185 652.9 439 89.7
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 1.6e-183 646.7 496 81.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.5e-181 640.2 570 70.7
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.2e-181 638.6 577 71.9
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 8.0e-180 634.4 556 73.4
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 4.4e-178 628.6 572 72.2
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 4.1e-176 622.1 577 70.7
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 2.2e-174 616.3 547 69.7
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 9.4e-173 610.9 583 63.1
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 4.7e-172 608.6 545 73.9
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 8.0e-172 607.8 574 68.5
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 2.3e-171 606.3 545 70.3
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.2e-170 604.0 528 71.4
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 2.6e-170 602.8 559 71.7
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 3.4e-170 602.4 557 67.1
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 4.4e-170 602.1 559 68.3
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 7.5e-170 601.3 552 69.6
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.4e-168 597.0 553 65.6
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.4e-168 597.0 548 68.6
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.4e-168 596.3 567 69.7
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.4e-168 595.1 531 72.3
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 5.0e-166 588.6 535 68.6
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.8e-163 580.1 557 66.4
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 2.8e-161 572.8 558 66.8
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 3.7e-161 572.4 539 68.1
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.4e-160 569.7 554 67.5
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 3.1e-160 569.3 666 56.3
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 2.7e-159 566.2 555 65.9
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 3.5e-159 565.8 544 67.8
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 3.5e-159 565.8 551 64.1
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.5e-159 565.5 580 66.0
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 4.5e-159 565.5 535 68.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.7e-158 563.5 581 61.8
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 1.1e-157 560.8 561 63.6
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 6.1e-156 555.1 590 62.7
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 8.0e-156 554.7 579 64.6
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.0e-155 554.3 549 64.8
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.3e-155 553.1 563 65.2
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 5.2e-155 552.0 512 66.8
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 5.8e-154 548.5 564 64.5
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 7.0e-152 541.6 434 80.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.2e-151 540.8 538 65.2
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.3e-150 537.3 495 65.7
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 5.6e-149 531.9 493 66.1
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.2e-148 530.8 568 63.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.1e-148 530.0 548 63.7
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 6.2e-148 528.5 492 69.5
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 4.4e-146 522.3 550 64.4
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.1e-144 517.7 571 61.5
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 3.5e-143 512.7 542 63.3
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.3e-142 510.8 481 65.9
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 1.3e-142 510.8 580 59.0
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.6e-142 508.4 461 71.1
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 2.1e-140 503.4 567 60.8
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 1.4e-139 500.7 553 62.0
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 1.8e-139 500.4 556 60.1
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.3e-139 500.0 609 54.7
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 8.9e-139 498.0 561 58.3
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 2.6e-138 496.5 500 64.6
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.9e-136 490.3 503 63.4
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.7e-134 483.8 483 63.8
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.5e-133 480.7 555 59.1
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 4.3e-133 479.2 569 59.6
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 4.3e-133 479.2 469 63.5
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 2.8e-132 476.5 548 55.3
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 6.2e-132 475.3 539 53.1
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.8e-131 473.8 572 58.4
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 3.1e-131 473.0 515 57.5
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 4.0e-131 472.6 543 54.3
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 5.2e-131 472.2 552 61.2
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.2e-130 471.1 531 54.8
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 3.4e-130 469.5 541 58.6
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.4e-130 469.2 574 54.2
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.9e-129 466.5 533 55.2
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.1e-128 464.5 563 59.9
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.8e-124 449.9 544 59.7
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 3.1e-123 446.4 559 51.3
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 9.0e-123 444.9 548 54.0
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.3e-121 441.0 539 52.1
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 1.4e-120 437.6 548 57.5
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.1e-117 427.9 554 57.0
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.5e-117 427.6 545 57.2
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.9e-117 427.2 427 66.3
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-115 421.4 549 55.4
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 9.0e-115 418.3 549 55.2
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 9.0e-115 418.3 549 55.2
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 4.5e-114 416.0 502 57.4
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 9.9e-114 414.8 487 53.6
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 9.9e-114 414.8 324 72.8
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.0e-110 404.8 313 70.9
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.5e-109 400.2 308 72.1
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.4e-107 393.7 320 69.4
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 3.0e-86 323.6 481 53.2
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.2e-84 317.4 210 80.5
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.0e-81 308.5 204 78.4
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 2.5e-80 303.9 360 64.4
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.8e-78 297.7 233 66.1
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 3.0e-78 297.0 215 76.7
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 2.6e-77 293.9 172 89.5
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 9.1e-67 258.8 213 62.9
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.2e-66 258.5 221 60.6
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 4.5e-66 256.5 227 61.2
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 4.5e-66 256.5 225 61.8
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 8.8e-62 242.3 310 49.0
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 2.8e-60 237.3 252 52.4
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.1e-51 208.8 336 42.6
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 1.1e-51 208.8 188 65.4
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 7.0e-51 206.1 225 52.4
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 5.5e-48 196.4 225 53.8
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 2.1e-47 194.5 136 79.4
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 7.5e-45 186.0 178 62.4
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 4.9e-44 183.3 153 73.9
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 5.4e-43 179.9 204 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 5.9e-42 176.4 237 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 8.0e-39 166.0 242 40.9
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 3.4e-37 160.6 274 40.1
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.1e-32 145.6 184 53.3
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.9e-32 144.8 106 71.7
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.4e-30 138.7 156 51.9
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 2.4e-27 127.9 79 84.8
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 2.1e-26 124.8 107 68.2
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 6.0e-26 123.2 78 80.8
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 4.0e-22 110.5 66 77.3
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 8.9e-22 109.4 64 85.9
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 9.9e-21 105.9 97 58.8
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 4.9e-20 103.6 69 75.4
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 2.1e-18 98.2 127 54.3
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 2.7e-18 97.8 106 62.3
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-17 95.5 133 45.1
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-17 95.1 175 44.0
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 8.6e-17 92.8 115 54.8
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 7.3e-16 89.7 155 40.0
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 9.6e-16 89.4 52 84.6
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 9.9e-13 79.3 72 66.7
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 9.9e-13 79.3 46 82.6
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 1.6e-10 72.0 39 84.6
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 1.6e-10 72.0 39 84.6
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.7e-10 71.2 71 54.9
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 3.5e-10 70.9 115 40.0
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 6.0e-10 70.1 44 75.0
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 7.8e-10 69.7 40 82.5
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.3e-09 68.9 70 55.7
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 3.0e-09 67.8 251 30.3
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 6.6e-09 66.6 113 40.7
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 1.1e-08 65.9 72 66.7
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 2.5e-08 64.7 107 42.1
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 1.3e-07 62.4 86 48.8
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 1.3e-07 62.4 86 48.8
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 1.3e-07 62.4 86 48.8
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 1.6e-07 62.0 42 71.4
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 1.6e-07 62.0 54 61.1
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 2.1e-07 61.6 107 43.9
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 6.2e-07 60.1 63 52.4
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-06 59.3 54 68.5
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.8e-06 58.5 46 69.6
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.8e-06 58.5 73 64.4


User provided reference genes

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