Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 5.5e-62 240.7 117 100.0
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 5.7e-59 230.7 117 94.0
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 5.7e-59 230.7 117 94.9
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.4e-57 226.1 117 91.5
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 7.0e-57 223.8 117 90.6
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.2e-56 223.0 116 90.5
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.2e-56 223.0 117 90.6
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 4.5e-56 221.1 114 91.2
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 7.7e-56 220.3 117 89.7
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.7e-55 219.2 116 89.7
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 2.2e-55 218.8 118 89.0
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.8e-55 218.0 116 88.8
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.5e-55 217.2 117 84.6
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 8.5e-55 216.9 114 89.5
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.1e-54 216.5 116 87.9
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.1e-54 216.5 118 88.1
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.5e-54 216.1 116 88.8
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.9e-54 215.7 117 85.5
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 1.9e-54 215.7 118 88.1
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.5e-54 215.3 117 86.3
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.5e-54 215.3 117 88.9
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.5e-54 215.3 116 88.8
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 86.2
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 5.5e-54 214.2 114 86.8
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 5.5e-54 214.2 115 87.0
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 5.5e-54 214.2 115 87.0
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.5e-54 214.2 115 87.0
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 7.2e-54 213.8 115 87.8
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 7.2e-54 213.8 116 86.2
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 9.4e-54 213.4 116 87.1
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.4e-54 213.4 116 87.1
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.2e-53 213.0 117 85.5
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.2e-53 213.0 117 85.5
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.2e-53 213.0 117 85.5
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.2e-53 213.0 115 85.2
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.2e-53 213.0 117 82.1
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 88.8
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.6e-53 212.6 115 85.2
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.7e-53 211.8 115 85.2
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 2.7e-53 211.8 116 84.5
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 3.6e-53 211.5 116 85.3
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 4.7e-53 211.1 116 87.9
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 4.7e-53 211.1 116 86.2
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 6.1e-53 210.7 116 87.9
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 6.1e-53 210.7 116 87.9
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 8.0e-53 210.3 113 89.4
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 8.0e-53 210.3 115 84.3
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.0e-52 209.9 116 85.3
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.0e-52 209.9 116 84.5
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.3e-52 208.8 116 82.8
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 2.3e-52 208.8 116 82.8
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.0e-52 208.4 116 85.3
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 5.2e-52 207.6 119 85.7
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 5.2e-52 207.6 119 85.7
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 5.2e-52 207.6 115 87.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 6.7e-52 207.2 116 84.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 6.7e-52 207.2 115 86.1
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.2e-51 206.5 119 83.2
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-51 206.5 114 84.2
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 81.0
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 86.1
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.5e-51 206.1 118 85.6
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.0e-51 205.7 116 83.6
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.0e-51 205.7 114 83.3
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 2.6e-51 205.3 116 83.6
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 2.6e-51 205.3 114 85.1
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 7.5e-51 203.8 116 82.8
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 9.7e-51 203.4 119 84.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 2.8e-50 201.8 127 78.7
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 3.7e-50 201.4 117 78.6
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 81.7
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.4e-49 199.5 112 83.0
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.8e-49 199.1 123 78.9
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.1e-49 198.0 116 81.0
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.1e-49 198.0 114 81.6
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 7.0e-49 197.2 118 78.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 79.5
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 79.5
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 79.5
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 79.5
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 9.1e-49 196.8 117 79.5
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.2e-48 196.4 114 81.6
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.2e-48 196.4 167 60.5
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.2e-48 196.4 128 74.2
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 80.7
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 80.7
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 80.7
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 80.7
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 2.7e-48 195.3 113 81.4
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 3.5e-48 194.9 114 79.8
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 4.5e-48 194.5 117 78.6
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 5.9e-48 194.1 114 79.8
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 5.9e-48 194.1 114 79.8
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 7.7e-48 193.7 112 80.4
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 7.7e-48 193.7 114 79.8
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 7.7e-48 193.7 114 79.8
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 7.7e-48 193.7 114 79.8
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 7.7e-48 193.7 114 79.8
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.0e-47 193.4 114 80.7
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.0e-47 193.4 114 82.5
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.0e-47 193.4 114 79.8
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.0e-47 193.4 116 77.6
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.0e-47 193.4 117 80.3
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 1.7e-47 192.6 114 78.9
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 1.7e-47 192.6 114 78.9
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 5.0e-47 191.0 114 78.1
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 5.0e-47 191.0 117 73.5
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 6.5e-47 190.7 117 80.3
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 8.5e-47 190.3 114 78.1
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.5e-46 188.7 113 80.5
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 1.6e-45 186.0 115 73.9
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 1.6e-45 186.0 96 92.7
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 8.0e-45 183.7 117 72.6
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.8e-44 182.6 115 71.3
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.8e-44 182.6 115 71.3
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 6.8e-44 180.6 116 76.7
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 8.8e-44 180.3 99 86.9
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.2e-43 179.9 117 74.4
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.7e-43 177.6 98 85.7
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.7e-43 177.6 98 85.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 9.8e-43 176.8 100 85.0
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.7e-42 176.0 112 75.0
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 3.7e-42 174.9 130 67.7
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.1e-41 173.3 119 76.5
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 9.1e-41 170.2 97 83.5
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-40 169.9 97 82.5
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.5e-40 168.3 121 71.1
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.2e-37 159.8 101 73.3
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.8e-37 158.7 97 81.4
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 6.8e-36 154.1 110 61.8
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 6.8e-36 154.1 114 61.4
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 9.8e-35 150.2 98 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 2.8e-34 148.7 112 59.8
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.2e-32 143.3 100 71.0
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 3.8e-31 138.3 95 73.7
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 8.6e-31 137.1 114 54.4
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 5.4e-25 117.9 116 56.0
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.2e-24 116.7 63 87.3
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.6e-24 116.3 65 87.7
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.0e-24 115.9 80 68.8
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 6.0e-24 114.4 59 89.8
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 3.9e-23 111.7 63 85.7
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 3.9e-23 111.7 158 45.6
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 5.0e-23 111.3 57 91.2
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.9e-22 109.4 63 84.1
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.5e-22 109.0 63 79.4
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 4.3e-22 108.2 59 84.7
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 1.2e-21 106.7 59 84.7
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.2e-21 106.7 52 94.2
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.2e-21 106.7 61 80.3
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 4.7e-21 104.8 53 88.7
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.8e-20 102.8 52 86.5
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.8e-20 102.8 70 72.9
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 3.1e-20 102.1 50 94.0
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-19 100.1 51 86.3
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 3.7e-18 95.1 134 40.3
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 3.2e-17 92.0 136 38.2
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.1e-12 77.0 53 73.6
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 8.9e-12 73.9 70 51.4
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 3.2e-09 65.5 35 88.6
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.7e-07 59.7 100 46.0
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 4.3e-06 55.1 113 35.4


User provided reference genes

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