Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g008750 Medicago truncatula HOM05D006690 ORTHO05D008541 9.3e-153 543.5 273 100.0
Psat0s3069g0040 Pisum sativum HOM05D006690 ORTHO05D008541 2.4e-140 502.3 279 91.4
Ca_24481_v3 Cicer arietinum L. HOM05D006690 ORTHO05D008541 4.8e-125 451.4 281 85.1
Glyma.01G231900 Glycine max HOM05D006690 ORTHO05D008541 1.2e-112 410.2 272 77.9
LjContig00222g0026492 Lotus japonicus HOM05D006690 ORTHO05D008541 4.7e-112 408.3 283 76.0
TPR.G37964 Trifolium pratense HOM05D006690 ORTHO05D008541 1.5e-110 403.3 276 78.3
VMungo1215G2418 Vigna mungo HOM05D006690 ORTHO05D008541 2.8e-109 399.1 282 75.5
arahy.Tifrunner.gnm1.ann1.PSIH1X Arachis hypogaea HOM05D006690 ORTHO05D008541 4.1e-108 395.2 322 67.1
CiPaw.03G016600 Carya illinoinensis HOM05D006690 ORTHO05D008541 1.0e-106 390.6 249 75.9
TAR628G1481 Trochodendron aralioides HOM05D006690 ORTHO05D008541 1.0e-106 390.6 253 77.5
AUR62022402 Chenopodium quinoa HOM05D006690 ORTHO05D008541 1.3e-106 390.2 236 82.2
CSS0045264 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 2.2e-106 389.4 242 81.0
CSS0006473 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 6.5e-106 387.9 290 71.7
QL09p003717 Quercus lobata HOM05D006690 ORTHO05D008541 8.5e-106 387.5 242 78.9
Lalb_Chr16g0376791 Lupinus albus HOM05D006690 ORTHO05D008541 1.1e-105 387.1 262 76.7
Cfa008102 Carpinus fangiana HOM05D006690 ORTHO05D008541 1.9e-105 386.3 284 71.1
Hma1.2p1_0442F.1_g153970 Hydrangea macrophylla HOM05D006690 ORTHO05D008541 1.9e-105 386.3 262 75.2
GSVIVG01036428001 Vitis vinifera HOM05D006690 ORTHO05D008541 2.5e-105 386.0 282 70.2
Actinidia23025 Actinidia chinensis HOM05D006690 ORTHO05D008541 4.2e-105 385.2 259 77.6
AUR62043541 Chenopodium quinoa HOM05D006690 ORTHO05D008541 5.5e-105 384.8 236 80.9
COL.COLO4_14973 Corchorus olitorius HOM05D006690 ORTHO05D008541 1.2e-104 383.6 233 82.0
Potri.019G073900 Populus trichocarpa HOM05D006690 ORTHO05D008541 1.6e-104 383.3 227 80.2
MELO3C022193.2 Cucumis melo HOM05D006690 ORTHO05D008541 2.1e-104 382.9 247 78.1
CsaV3_5G040160 Cucumis sativus L. HOM05D006690 ORTHO05D008541 2.1e-104 382.9 247 78.1
Dinv09402 Davidia involucrata HOM05D006690 ORTHO05D008541 2.1e-104 382.9 231 81.8
CANSAT21G2558 Cannabis sativa HOM05D006690 ORTHO05D008541 2.7e-104 382.5 248 77.4
Sopen11g018800 Solanum pennellii HOM05D006690 ORTHO05D008541 6.1e-104 381.3 224 84.4
EL10Ac1g01712 Beta vulgaris HOM05D006690 ORTHO05D008541 1.0e-103 380.6 236 80.5
Manes.02G208400 Manihot esculenta HOM05D006690 ORTHO05D008541 1.0e-103 380.6 250 75.6
Solyc11g042640.2 Solanum lycopersicum HOM05D006690 ORTHO05D008541 1.0e-103 380.6 224 84.4
Duzib177G0086 Durio zibethinus HOM05D006690 ORTHO05D008541 1.4e-103 380.2 262 74.0
PGR042G1281 Punica granatum HOM05D006690 ORTHO05D008541 1.4e-103 380.2 283 69.6
Ah.05g168760 Amaranthus hybridus HOM05D006690 ORTHO05D008541 1.8e-103 379.8 284 71.5
ClCG08G000730 Citrullus lanatus HOM05D006690 ORTHO05D008541 2.3e-103 379.4 272 72.1
Sc02g0003840 Simmondsia chinensis HOM05D006690 ORTHO05D008541 2.3e-103 379.4 276 71.4
Gohir.A05G252900 Gossypium hirsutum HOM05D006690 ORTHO05D008541 3.0e-103 379.0 232 80.6
Gohir.D05G254800 Gossypium hirsutum HOM05D006690 ORTHO05D008541 3.0e-103 379.0 232 80.6
Gorai.009G266300 Gossypium raimondii HOM05D006690 ORTHO05D008541 3.0e-103 379.0 232 80.6
Thecc.08G174200 Theobroma cacao HOM05D006690 ORTHO05D008541 3.0e-103 379.0 263 73.4
Haze_13934 Corylus avellana HOM05D006690 ORTHO05D008541 3.9e-103 378.6 284 70.4
Cpa.g.sc21.64 Carica papaya HOM05D006690 ORTHO05D008541 5.2e-103 378.3 237 76.8
Nitab4.5_0010632g0010 Nicotiana tabacum HOM05D006690 ORTHO05D008541 6.7e-103 377.9 233 80.3
MBI06_g35694_MAGBIO Magnolia biondii HOM05D006690 ORTHO05D008541 8.8e-103 377.5 233 79.4
Nitab4.5_0004761g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 2.0e-102 376.3 272 72.8
arahy.Tifrunner.gnm1.ann1.M9KTRI Arachis hypogaea HOM05D006690 ORTHO05D008541 2.6e-102 375.9 367 58.3
PGSC0003DMG400017809 Solanum tuberosum HOM05D006690 ORTHO05D008541 2.6e-102 375.9 224 83.0
THA.LOC104800085 Tarenaya hassleriana HOM05D006690 ORTHO05D008541 5.7e-102 374.8 224 80.8
Prupe.1G128000 Prunus persica HOM05D006690 ORTHO05D008541 7.4e-102 374.4 295 67.5
Eucgr.F02968 Eucalyptus grandis HOM05D006690 ORTHO05D008541 9.7e-102 374.0 250 74.0
Lj9A700T90 Lonicera japonica HOM05D006690 ORTHO05D008541 9.7e-102 374.0 245 77.1
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 1.3e-101 373.6 260 73.1
BraA07t31340Z Brassica rapa HOM05D006690 ORTHO05D008541 1.3e-101 373.6 260 73.1
TWI75G0001 Tripterygium wilfordii HOM05D006690 ORTHO05D008541 1.7e-101 373.2 243 75.7
RcHm_v2.0_Chr2g0123251 Rosa chinensis HOM05D006690 ORTHO05D008541 2.2e-101 372.9 243 77.4
Rhsim12G0004800 Rhododendron simsii HOM05D006690 ORTHO05D008541 2.8e-101 372.5 237 78.9
MSTRG.1587 Avicennia marina HOM05D006690 ORTHO05D008541 6.3e-101 371.3 235 77.4
CAN.G83.1 Capsicum annuum HOM05D006690 ORTHO05D008541 8.2e-101 370.9 231 80.1
SalBow7G1428 Salvia bowleyana HOM05D006690 ORTHO05D008541 8.2e-101 370.9 229 79.0
Manes.18G119400 Manihot esculenta HOM05D006690 ORTHO05D008541 1.1e-100 370.5 294 67.0
Sp5g26650 Schrenkiella parvula HOM05D006690 ORTHO05D008541 1.4e-100 370.2 270 70.7
Thhalv10018960m.g Eutrema salsugineum HOM05D006690 ORTHO05D008541 1.8e-100 369.8 225 80.4
Atru.chr13.2467 Acer truncatum HOM05D006690 ORTHO05D008541 3.1e-100 369.0 237 76.4
BcaC08g46585 Brassica carinata HOM05D006690 ORTHO05D008541 3.1e-100 369.0 262 71.4
C06p45640 Brassica napus HOM05D006690 ORTHO05D008541 3.1e-100 369.0 262 71.4
Peaxi162Scf00078g00341 Petunia axillaris HOM05D006690 ORTHO05D008541 3.1e-100 369.0 232 79.3
Migut.C01361 Erythranthe guttata HOM05D006690 ORTHO05D008541 7.0e-100 367.9 283 67.1
Sed0015713 Sechium edule HOM05D006690 ORTHO05D008541 9.1e-100 367.5 225 80.0
Aqoxy5G00849 Aquilegia oxysepala HOM05D006690 ORTHO05D008541 1.2e-99 367.1 276 68.5
CARHR291180 Cardamine hirsuta HOM05D006690 ORTHO05D008541 2.0e-99 366.3 226 79.2
Nn5g27416 Nelumbo nucifera HOM05D006690 ORTHO05D008541 2.0e-99 366.3 266 70.7
Aa31LG4G9090 Aethionema arabicum HOM05D006690 ORTHO05D008541 2.6e-99 365.9 226 78.8
ECA247G0737 Erigeron canadensis HOM05D006690 ORTHO05D008541 2.6e-99 365.9 257 71.2
Sabra19G0085000 Salix brachista HOM05D006690 ORTHO05D008541 2.6e-99 365.9 249 72.7
AT1G71500 Arabidopsis thaliana HOM05D006690 ORTHO05D008541 3.5e-99 365.5 226 78.3
MD15G1137600 Malus domestica HOM05D006690 ORTHO05D008541 5.9e-99 364.8 281 70.1
Cc10_g09110 Coffea canephora HOM05D006690 ORTHO05D008541 7.7e-99 364.4 214 81.3
Ciclev10021386m.g Citrus clementina HOM05D006690 ORTHO05D008541 1.0e-98 364.0 232 75.4
AL2G31160 Arabidopsis lyrata HOM05D006690 ORTHO05D008541 1.3e-98 363.6 226 78.3
ATR1089G004 Amborella trichopoda HOM05D006690 ORTHO05D008541 3.8e-98 362.1 262 69.8
SGA_v2.0_scaffold24G10633 Striga asiatica HOM05D006690 ORTHO05D008541 8.5e-98 360.9 263 69.6
Carub.0002s1836 Capsella rubella HOM05D006690 ORTHO05D008541 1.1e-97 360.5 288 64.9
FAN19G1869 Fragaria x ananassa HOM05D006690 ORTHO05D008541 1.1e-97 360.5 270 70.0
HanXRQChr04g0102641 Helianthus annuus HOM05D006690 ORTHO05D008541 4.2e-97 358.6 226 77.4
FAN23G3093 Fragaria x ananassa HOM05D006690 ORTHO05D008541 7.2e-97 357.8 266 70.3
FAN28G2783 Fragaria x ananassa HOM05D006690 ORTHO05D008541 7.2e-97 357.8 266 70.3
FAN26G2368 Fragaria x ananassa HOM05D006690 ORTHO05D008541 2.1e-96 356.3 273 68.9
SGA_v2.0_scaffold118G32591 Striga asiatica HOM05D006690 ORTHO05D008541 3.6e-96 355.5 236 73.7
CDE05G2117 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 4.7e-96 355.1 255 70.6
PSO017G7034 Papaver somniferum HOM05D006690 ORTHO05D008541 4.7e-96 355.1 282 63.8
Lsat_1_v5_gn_1_25180 Lactuca sativa HOM05D006690 ORTHO05D008541 1.4e-95 353.6 276 68.5
Oeu023205.1 Olea europaea HOM05D006690 ORTHO05D008541 1.4e-95 353.6 326 61.0
PSO170G2989 Papaver somniferum HOM05D006690 ORTHO05D008541 1.4e-95 353.6 281 63.7
Phvul.002G035200 Phaseolus vulgaris HOM05D006690 ORTHO05D008541 4.0e-95 352.1 260 72.7
DCAR_017362 Daucus carota HOM05D006690 ORTHO05D008541 5.2e-95 351.7 242 69.8
HPP92_019451 Vanilla planifolia HOM05D006690 ORTHO05D008541 3.3e-94 349.0 247 69.2
unitig_8.g4892 Utricularia gibba HOM05D006690 ORTHO05D008541 4.4e-94 348.6 273 66.7
Zm00001eb142810 Zea mays HOM05D006690 ORTHO05D008541 7.5e-94 347.8 265 68.7
SEGI_25869 Sequoiadendron giganteum HOM05D006690 ORTHO05D008541 1.2e-86 323.9 241 66.8
Os11g0242400 Oryza sativa ssp. japonica HOM05D006690 ORTHO05D008541 1.3e-85 320.5 233 67.4
CDE05G3037 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 6.3e-77 291.6 200 73.5
vmacro22748 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 1.1e-76 290.8 292 59.2
Mapoly0043s0097 Marchantia polymorpha HOM05D006690 ORTHO05D008541 1.1e-73 280.8 202 64.9
Pp3c6_9090 Physcomitrium patens HOM05D006690 ORTHO05D008541 1.9e-73 280.0 220 60.0
SMO139G0118 Selaginella moellendorffii HOM05D006690 ORTHO05D008541 2.6e-70 269.6 202 63.4
Nitab4.5_0003013g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 3.7e-69 265.8 219 64.4
FvH4_1g25280 Fragaria vesca HOM05D006690 ORTHO05D008541 3.2e-68 262.7 206 65.5
CDE05G1864 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 3.1e-63 246.1 163 73.0
AagrBONN_evm.TU.Sc2ySwM_228.501 Anthoceros agrestis HOM05D006690 ORTHO05D008541 2.9e-61 239.6 263 51.7
vmacro00956 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 2.4e-39 166.8 294 41.8
QL09p003724 Quercus lobata HOM05D006690 ORTHO05D008541 3.8e-37 159.5 175 53.1
Cre09.g411200 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D008541 3.3e-33 146.4 161 46.0
MCO14G230 Micromonas commoda HOM05D006690 ORTHO05D008541 3.3e-33 146.4 152 46.7
GSVIVG01034644001 Vitis vinifera HOM05D006690 ORTHO05D008541 1.8e-31 140.6 95 73.7
PRCOL_00001119 Prasinoderma coloniale HOM05D006690 ORTHO05D008541 4.0e-31 139.4 176 42.0
QL09p003744 Quercus lobata HOM05D006690 ORTHO05D008541 2.9e-29 133.3 90 76.7
SGA_v2.0_scaffold7G03910 Striga asiatica HOM05D006690 ORTHO05D008541 2.1e-24 117.1 86 67.4
unitig_578.g16121 Utricularia gibba HOM05D006690 ORTHO05D008541 1.1e-23 114.8 131 43.5
MCO05G575 Micromonas commoda HOM05D006690 ORTHO05D044287 8.2e-08 62.0 112 35.7
Cre02.g093650 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D044287 5.9e-06 55.8 147 29.3


User provided reference genes

Program Settings