Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g007580 Medicago truncatula HOM05D000411 ORTHO05D000310 1.3e-28 129.0 65 100.0
Cre12.g549750 Chlamydomonas reinhardtii HOM05D000411 ORTHO05D000310 3.1e-06 54.7 32 75.0
arahy.Tifrunner.gnm1.ann1.XAW0JE Arachis hypogaea HOM05D000411 ORTHO05D000310 4.1e-06 54.3 33 69.7
SMO147G0359 Selaginella moellendorffii HOM05D000411 ORTHO05D000310 4.1e-06 54.3 32 71.9
Sc20g0000620 Simmondsia chinensis HOM05D000411 ORTHO05D000310 4.1e-06 54.3 32 71.9
SGA_v2.0_scaffold138G35209 Striga asiatica HOM05D000411 ORTHO05D000310 5.3e-06 53.9 33 72.7
SGA_v2.0_scaffold1G00628 Striga asiatica HOM05D000411 ORTHO05D000310 5.3e-06 53.9 33 72.7
unitig_22.g6019 Utricularia gibba HOM05D000411 ORTHO05D000310 5.3e-06 53.9 41 61.0
unitig_578.g16427 Utricularia gibba HOM05D000411 ORTHO05D000310 5.3e-06 53.9 44 59.1
unitig_8.g3526 Utricularia gibba HOM05D000411 ORTHO05D000310 5.3e-06 53.9 41 61.0
Cfa024175 Carpinus fangiana HOM05D000411 ORTHO05D000310 6.9e-06 53.5 41 63.4
Gohir.D02G046000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 6.9e-06 53.5 34 67.6
MCO05G119 Micromonas commoda HOM05D000411 ORTHO05D000310 6.9e-06 53.5 32 75.0
Hund02918 Selenicereus undatus HOM05D000411 ORTHO05D000310 6.9e-06 53.5 32 68.8
Hund20821 Selenicereus undatus HOM05D000411 ORTHO05D000310 6.9e-06 53.5 32 68.8
Zm00001eb247510 Zea mays HOM05D000411 ORTHO05D000310 6.9e-06 53.5 32 68.8
Atru.chr4.2042 Acer truncatum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Ah.02g112010 Amaranthus hybridus HOM05D000411 ORTHO05D000606 9.0e-06 53.1 47 53.2
Ah.11g049620 Amaranthus hybridus HOM05D000411 ORTHO05D000310 9.0e-06 53.1 47 53.2
ATR0736G173 Amborella trichopoda HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
arahy.Tifrunner.gnm1.ann1.02F7EH Arachis hypogaea HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
arahy.Tifrunner.gnm1.ann1.K4ZA4B Arachis hypogaea HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
MSTRG.12527 Avicennia marina HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
MSTRG.21480 Avicennia marina HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Cpa.g.sc165.23 Carica papaya HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Cfa022944 Carpinus fangiana HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Ciclev10004925m.g Citrus clementina HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Ciclev10020024m.g Citrus clementina HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Cc01_g18140 Coffea canephora HOM05D000411 ORTHO05D000310 9.0e-06 53.1 35 65.7
COL.COLO4_15890 Corchorus olitorius HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Haze_11398 Corylus avellana HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
DCAR_005682 Daucus carota HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
DCAR_018498 Daucus carota HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Duzib151G0021 Durio zibethinus HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
ECA236G3712 Erigeron canadensis HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
ECA247G3239 Erigeron canadensis HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
ECA248G2969 Erigeron canadensis HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Eucgr.H03031 Eucalyptus grandis HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
FvH4_4g03850 Fragaria vesca HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
FAN12G2457 Fragaria x ananassa HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
FAN17G0392 Fragaria x ananassa HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
FAN22G0136 Fragaria x ananassa HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Gohir.A02G039800 Gossypium hirsutum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Gohir.A09G229300 Gossypium hirsutum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Gohir.D09G230300 Gossypium hirsutum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Gorai.005G050700 Gossypium raimondii HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Gorai.006G253000 Gossypium raimondii HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
HanXRQChr04g0111381 Helianthus annuus HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
HanXRQChr06g0172441 Helianthus annuus HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
HanXRQChr15g0467521 Helianthus annuus HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Lj2A1147T81 Lonicera japonica HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Lj5g0009586 Lotus japonicus HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Manes.03G163300 Manihot esculenta HOM05D000411 ORTHO05D000310 9.0e-06 53.1 47 53.2
Manes.08G139600 Manihot esculenta HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Manes.09G147800 Manihot esculenta HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Manes.15G042000 Manihot esculenta HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Nn1g02825 Nelumbo nucifera HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Nn3g19699 Nelumbo nucifera HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Nitab4.5_0000326g0170 Nicotiana tabacum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Nitab4.5_0005593g0020 Nicotiana tabacum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Oeu033804.2 Olea europaea HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Oeu041604.1 Olea europaea HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Prupe.1G040700 Prunus persica HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
PGR004G2746 Punica granatum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
PGR142G2018 Punica granatum HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
QL06p018364 Quercus lobata HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
SalBow3G2283 Salvia bowleyana HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
SalBow3G3390 Salvia bowleyana HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
SalBow4G2642 Salvia bowleyana HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
SMO356G0478 Selaginella moellendorffii HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Sc05g0000670 Simmondsia chinensis HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Sc09g0004210 Simmondsia chinensis HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
SGA_v2.0_scaffold67G22722 Striga asiatica HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
THA.LOC104804757 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
THA.LOC104808634 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
Thecc.04G256800 Theobroma cacao HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
TWI09G1022 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
TWI75G1326 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
HPP92_020846 Vanilla planifolia HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
VMungo0720G0132 Vigna mungo HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8
GSVIVG01027835001 Vitis vinifera HOM05D000411 ORTHO05D000310 9.0e-06 53.1 32 68.8


User provided reference genes

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