Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 6.6e-182 640.6 323 100.0
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 4.6e-159 564.7 323 87.0
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 6.6e-158 560.8 324 87.0
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.3e-156 556.6 364 79.4
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 8.2e-140 500.7 323 77.1
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 8.2e-140 500.7 323 76.2
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.1e-136 490.3 323 74.6
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.9e-136 489.6 324 75.3
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 3.2e-136 488.8 324 76.9
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-132 476.9 324 71.6
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.3e-132 476.9 323 73.1
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 2.1e-132 476.1 324 71.6
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.1e-123 445.3 323 67.2
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 4.1e-123 445.3 323 67.2
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 9.1e-123 444.1 325 66.2
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.0e-121 440.7 324 65.4
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.0e-121 440.7 324 65.4
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.1e-120 437.2 323 65.3
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.4e-120 436.8 323 66.3
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 2.5e-120 436.0 324 64.5
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.2e-120 435.3 324 66.4
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 7.2e-120 434.5 326 66.0
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 9.4e-120 434.1 324 65.4
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.7e-119 432.6 323 64.4
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 3.6e-119 432.2 325 64.6
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 7.9e-119 431.0 326 66.0
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 5.7e-117 424.9 323 62.5
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.8e-116 421.8 338 62.4
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.4e-115 419.5 330 63.0
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.2e-114 417.2 323 63.8
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.5e-114 416.8 323 62.5
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 2.0e-114 416.4 324 63.3
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 4.5e-114 415.2 327 63.0
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 5.9e-114 414.8 323 62.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.7e-113 413.3 323 60.1
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.5e-113 411.0 323 61.3
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.9e-112 409.8 323 61.9
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 4.2e-112 408.7 323 64.7
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 9.4e-112 407.5 323 64.7
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.2e-111 407.1 323 60.7
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.8e-110 403.3 363 54.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.8e-110 403.3 323 59.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.3e-110 402.9 323 62.8
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 6.7e-110 401.4 325 63.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.8e-110 401.0 325 60.9
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-109 400.6 323 60.7
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.1e-109 400.6 325 62.8
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.4e-109 398.7 323 60.4
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 5.7e-109 398.3 323 58.2
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 9.7e-109 397.5 341 61.0
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 2.2e-108 396.4 322 60.2
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 6.3e-108 394.8 306 63.7
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.2e-108 394.4 323 59.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.1e-107 394.0 324 60.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.8e-107 393.3 379 53.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 4.1e-107 392.1 323 61.3
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 5.3e-107 391.7 338 58.6
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.1e-107 391.0 324 60.2
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.6e-106 390.2 324 59.9
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.0e-106 389.8 306 60.8
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 5.9e-106 388.3 324 57.4
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 7.7e-106 387.9 323 58.2
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-105 386.7 324 60.8
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.9e-105 386.0 323 61.6
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.5e-105 384.8 324 60.5
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.1e-104 384.0 333 59.8
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 2.5e-104 382.9 324 61.4
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-104 382.9 324 61.4
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.2e-104 382.5 324 60.2
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 9.4e-104 380.9 333 59.2
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.0e-102 377.5 325 59.7
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.8e-102 376.7 392 51.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 5.2e-102 375.2 349 55.9
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 5.2e-102 375.2 323 54.5
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.2e-101 374.0 325 60.0
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.5e-101 373.6 323 55.4
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.3e-101 372.5 325 59.4
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.3e-100 370.5 323 53.9
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 2.2e-100 369.8 359 55.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 2.2e-100 369.8 323 55.7
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 8.2e-100 367.9 326 57.4
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.4e-99 367.1 324 58.3
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 3.1e-99 365.9 319 57.4
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.2e-98 364.0 308 57.1
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.5e-98 362.5 319 57.1
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 4.5e-98 362.1 326 55.8
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.5e-98 362.1 319 58.3
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.0e-97 360.9 368 53.8
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 7.2e-96 354.8 319 57.7
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 9.4e-96 354.4 328 56.4
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.0e-94 350.9 308 56.8
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.4e-93 345.9 326 55.8
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.5e-93 344.7 310 56.8
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.4e-91 340.5 362 51.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.3e-89 334.0 324 52.5
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.3e-89 333.2 295 59.0
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.3e-89 333.2 326 51.8
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 2.9e-89 332.8 327 52.9
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 4.2e-88 328.9 327 52.9
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.6e-87 327.0 324 50.3
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.6e-87 327.0 323 52.6
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 2.8e-87 326.2 323 52.0
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.1e-87 325.1 326 51.5
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 6.1e-87 325.1 326 52.1
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 5.2e-86 322.0 326 52.1
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.4e-85 318.9 301 56.8
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 5.7e-85 318.5 324 52.2
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 2.8e-84 316.2 362 45.9
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 5.4e-83 312.0 329 48.3
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 9.2e-83 311.2 215 67.9
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.0e-81 307.8 285 55.4
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.0e-81 307.8 250 59.2
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.5e-80 303.9 346 47.1
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-78 296.2 268 55.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.0e-73 281.2 234 59.0
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.3e-72 275.8 316 49.4
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 8.0e-71 271.6 308 48.1
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 3.4e-69 266.2 323 44.9
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.4e-68 261.9 325 48.0
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.1e-67 261.2 261 50.6
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.3e-65 254.2 210 64.3
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.3e-65 254.2 247 50.6
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.3e-65 253.4 323 44.3
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 7.5e-61 238.4 211 59.7
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.3e-60 237.7 294 46.6
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.3e-60 237.7 289 47.1
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.9e-60 235.7 171 64.9
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 2.3e-49 200.3 145 67.6
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 3.6e-47 193.0 164 61.6
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 5.2e-46 189.1 174 53.4
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 5.4e-43 179.1 165 58.2
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 5.4e-43 179.1 145 63.4
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.0e-42 175.6 247 42.9
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 5.1e-41 172.6 150 52.0
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.1e-40 171.4 164 55.5
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 3.6e-39 166.4 127 58.3
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 4.8e-39 166.0 308 37.3
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.4e-38 164.5 340 34.4
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.0e-37 160.6 151 53.6
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 4.2e-35 152.9 122 62.3
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.0e-33 148.3 91 81.3
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 6.2e-31 139.0 209 37.3
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 9.0e-30 135.2 214 35.5
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.6e-26 124.4 115 48.7
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.6e-26 122.9 120 50.8
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.5e-24 117.9 305 30.2
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.4e-22 111.3 84 63.1
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.2e-21 108.2 95 61.1
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-20 103.2 74 66.2
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 8.4e-20 102.1 74 66.2
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 8.4e-20 102.1 74 66.2
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 9.3e-19 98.6 86 57.0
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 3.5e-18 96.7 61 77.0
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 5.1e-17 92.8 61 77.0
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-16 91.3 120 45.0
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.6e-15 87.8 78 52.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.4e-13 80.1 66 59.1
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 2.2e-12 77.4 56 67.9
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 9.7e-08 62.0 55 58.2
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 1.8e-06 57.8 38 68.4


User provided reference genes

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