Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 2.1e-143 512.3 254 100.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 9.6e-120 433.7 256 84.4
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.1e-118 430.3 256 85.2
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.8e-118 429.5 256 85.2
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.0e-116 423.7 254 85.4
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.3e-116 423.3 256 82.0
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.1e-111 406.0 254 81.5
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 4.1e-110 401.7 256 78.5
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.2e-109 400.2 255 78.4
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 9.7e-104 380.6 256 75.8
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 1.3e-103 380.2 252 77.4
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 1.6e-103 379.8 254 76.8
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.5e-99 365.9 252 74.2
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 2.2e-95 352.8 254 74.0
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.4e-86 322.8 227 71.8
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.7e-77 292.7 238 60.9
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 5.0e-76 288.5 256 58.2
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 5.0e-76 288.5 256 58.2
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 9.4e-75 284.3 243 60.1
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.6e-74 283.5 256 56.6
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 2.7e-74 282.7 236 60.2
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 3.0e-73 279.3 256 55.5
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 5.2e-73 278.5 257 56.0
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 6.8e-73 278.1 238 58.0
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 9.8e-72 274.2 256 56.6
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.1e-70 270.8 256 55.1
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.1e-70 270.8 255 55.7
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.4e-70 269.6 215 66.0
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.6e-69 266.9 254 54.7
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.5e-69 265.8 256 53.9
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.9e-69 265.0 254 53.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.0e-68 264.2 257 53.7
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.7e-68 263.5 254 57.1
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.7e-68 263.5 213 65.3
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.2e-68 263.1 270 53.7
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.8e-68 262.3 252 53.2
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 3.2e-67 259.2 252 53.6
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 7.2e-67 258.1 234 54.7
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.2e-66 257.3 233 53.2
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.1e-66 256.5 239 54.8
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.1e-66 256.5 257 52.9
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.7e-66 256.1 241 53.1
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 2.7e-66 256.1 243 54.3
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.7e-66 255.4 254 54.3
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 3.0e-65 252.7 236 53.8
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 3.0e-65 252.7 255 54.1
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 4.0e-65 252.3 254 50.4
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 4.0e-65 252.3 256 50.8
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 5.2e-65 251.9 234 53.4
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.0e-64 250.0 231 55.0
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.0e-64 250.0 238 51.7
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.6e-64 249.6 232 55.6
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 5.7e-64 248.4 234 53.0
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.2e-63 246.5 191 64.9
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 2.8e-63 246.1 236 51.7
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 4.9e-63 245.4 251 49.8
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.9e-63 245.4 241 53.9
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 6.3e-63 245.0 241 52.7
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 8.3e-63 244.6 243 53.5
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.1e-62 244.2 243 53.9
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.4e-62 243.8 256 49.2
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 3.1e-62 242.7 258 48.1
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.1e-62 242.3 255 52.9
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 9.2e-62 241.1 243 53.1
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 9.2e-62 241.1 253 50.2
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 9.2e-62 241.1 234 52.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.2e-61 240.7 259 48.6
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.0e-61 240.0 231 55.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 3.5e-61 239.2 235 52.8
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 4.5e-61 238.8 237 50.6
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 5.9e-61 238.4 236 52.1
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 7.7e-61 238.0 208 57.7
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.0e-60 237.7 228 53.1
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.0e-60 237.7 226 52.7
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.3e-60 237.3 240 49.2
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.7e-60 236.9 241 51.9
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 3.8e-60 235.7 210 56.7
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.1e-59 234.2 257 49.4
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.1e-59 234.2 245 52.7
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.9e-59 233.4 258 49.6
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.9e-59 233.4 241 50.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.5e-59 233.0 237 50.2
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.3e-59 232.3 236 50.0
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 7.3e-59 231.5 259 47.9
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 9.5e-59 231.1 255 49.0
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 9.5e-59 231.1 255 49.0
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.6e-58 230.3 235 48.5
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.8e-58 229.6 258 50.0
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 2.8e-58 229.6 243 50.6
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 3.0e-57 226.1 259 49.0
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 4.0e-57 225.7 254 48.8
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 4.0e-57 225.7 258 48.1
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 5.2e-57 225.3 256 49.6
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.5e-56 223.8 238 47.9
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.5e-56 223.8 238 47.9
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-56 223.8 255 47.8
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.6e-56 223.0 257 48.2
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.6e-56 223.0 253 47.0
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 3.4e-56 222.6 234 50.9
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 4.4e-56 222.2 256 47.7
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.7e-56 221.9 255 47.5
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 5.7e-56 221.9 254 45.3
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 7.5e-56 221.5 240 47.9
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.7e-55 220.3 256 47.3
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.9e-55 219.5 237 47.3
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 8.3e-55 218.0 238 48.7
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.1e-54 217.6 249 44.6
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 5.4e-54 215.3 256 46.1
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 7.8e-53 211.5 245 45.7
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.0e-52 211.1 236 46.6
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.0e-52 209.5 174 63.2
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.9e-52 209.1 239 48.1
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.9e-52 209.1 239 48.1
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.1e-51 207.6 220 51.8
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-51 207.2 139 77.7
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.9e-51 206.8 244 45.1
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 5.6e-51 205.3 227 50.2
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.1e-50 203.4 234 47.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.8e-50 203.0 215 47.9
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.6e-50 202.6 223 50.7
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 8.0e-50 201.4 236 45.3
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.1e-49 199.5 246 44.3
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 2.0e-48 196.8 182 56.6
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.4e-48 196.1 234 45.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 3.4e-48 196.1 242 44.6
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 9.8e-48 194.5 244 42.6
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.4e-46 190.7 230 46.5
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.3e-44 184.1 194 52.6
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.3e-44 184.1 194 52.6
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.7e-44 183.7 165 57.6
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 3.0e-44 183.0 226 45.1
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 8.6e-44 181.4 191 48.7
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.3e-43 179.5 240 40.4
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 9.8e-40 167.9 210 45.7
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 6.4e-39 165.2 261 38.3
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.3e-36 157.5 242 37.2
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 8.1e-34 148.3 147 52.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 4.6e-29 132.5 234 35.0
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 3.9e-28 129.4 169 42.6
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.1e-27 127.9 101 58.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.5e-24 117.5 111 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 9.9e-24 114.8 187 38.0
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.4e-22 110.9 86 60.5
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 2.3e-20 103.6 87 58.6
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 2.3e-20 103.6 147 40.8
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 4.3e-19 99.4 248 29.4
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 5.6e-19 99.0 86 59.3
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 7.6e-16 88.6 134 35.8
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 3.8e-15 86.3 68 54.4
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 6.4e-15 85.5 107 38.3
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.3e-10 71.2 75 49.3


User provided reference genes

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