Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 1.9e-94 349.4 204 100.0
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 1.9e-89 332.8 204 95.1
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 1.8e-60 236.5 179 73.2
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 3.4e-59 232.3 185 71.9
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 7.9e-48 194.5 181 64.1
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 2.2e-37 159.8 96 83.3
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 4.8e-29 132.1 170 51.8
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 3.0e-23 112.8 133 49.6
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 6.7e-23 111.7 142 46.5
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 6.7e-23 111.7 155 47.7
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 8.8e-23 111.3 133 49.6
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 1.3e-21 107.5 91 62.6
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 1.3e-21 107.5 117 50.4
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 1.7e-21 107.1 183 41.5
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 3.7e-21 105.9 153 43.1
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 8.2e-21 104.8 116 51.7
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 4.1e-20 102.4 170 41.2
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 2.0e-19 100.1 123 47.2
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 2.0e-19 100.1 123 47.2
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 4.5e-19 99.0 99 55.6
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 5.9e-19 98.6 150 45.3
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 7.7e-19 98.2 111 47.7
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 7.7e-19 98.2 122 48.4
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.3e-18 97.4 130 44.6
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.7e-18 97.1 134 47.0
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 1.7e-18 97.1 108 49.1
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 2.9e-18 96.3 110 48.2
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 2.9e-18 96.3 145 42.8
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 2.9e-18 96.3 150 43.3
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 3.8e-18 95.9 155 43.9
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 6.5e-18 95.1 141 44.0
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 6.5e-18 95.1 124 46.0
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 8.5e-18 94.7 143 42.7
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 8.5e-18 94.7 104 44.2
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.1e-17 94.4 153 41.8
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 1.1e-17 94.4 96 49.0
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 1.1e-17 94.4 143 42.7
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 1.5e-17 94.0 143 41.3
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 1.9e-17 93.6 105 43.8
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 4.2e-17 92.4 148 40.5
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 9.4e-17 91.3 88 51.1
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 9.4e-17 91.3 105 42.9
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 9.4e-17 91.3 85 52.9
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 1.2e-16 90.9 88 52.3
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 1.2e-16 90.9 119 46.2
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 1.2e-16 90.9 93 50.5
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 1.6e-16 90.5 99 48.5
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 1.6e-16 90.5 102 52.9
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 1.6e-16 90.5 94 53.2
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 1.6e-16 90.5 106 46.2
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.1e-16 90.1 173 35.3
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 2.1e-16 90.1 173 35.3
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 2.1e-16 90.1 98 44.9
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 3.6e-16 89.4 171 38.0
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 3.6e-16 89.4 98 43.9
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 3.6e-16 89.4 96 49.0
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 4.7e-16 89.0 171 38.0
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 6.1e-16 88.6 173 39.3
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 6.1e-16 88.6 173 34.1
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 8.0e-16 88.2 119 46.2
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 1.0e-15 87.8 122 42.6
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 1.8e-15 87.0 100 46.0
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 1.8e-15 87.0 133 42.1
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 1.8e-15 87.0 149 39.6
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 2.3e-15 86.7 109 45.0
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 3.0e-15 86.3 99 46.5
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 3.0e-15 86.3 171 38.0
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 3.0e-15 86.3 133 42.1
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 3.0e-15 86.3 100 45.0
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 4.0e-15 85.9 99 45.5
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 4.0e-15 85.9 99 45.5
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 4.0e-15 85.9 99 45.5
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 4.0e-15 85.9 99 45.5
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 4.0e-15 85.9 127 38.6
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 8.8e-15 84.7 96 49.0
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 8.8e-15 84.7 136 39.7
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 1.2e-14 84.3 177 36.7
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 1.5e-14 84.0 97 47.4
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 1.5e-14 84.0 97 47.4
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 2.0e-14 83.6 103 44.7
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 2.6e-14 83.2 122 43.4
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 2.6e-14 83.2 173 37.0
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 2.6e-14 83.2 98 40.8
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 2.6e-14 83.2 100 45.0
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 5.7e-14 82.0 146 39.0
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 5.7e-14 82.0 146 39.0
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 9.7e-14 81.3 143 39.9
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 2.2e-13 80.1 74 52.7
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 2.8e-13 79.7 195 34.4
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 4.8e-13 79.0 73 50.7
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 1.8e-12 77.0 126 40.5
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 3.1e-12 76.3 92 45.7
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 3.5e-11 72.8 138 38.4
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 1.1e-09 67.8 115 44.3
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.2e-08 64.3 113 37.2
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 4.7e-08 62.4 151 34.4
FvH4_3g08061 Fragaria vesca HOM05D007411 ORTHO05D009025 2.3e-07 60.1 54 51.9
ATR0665G366 Amborella trichopoda HOM05D007411 ORTHO05D009025 3.0e-07 59.7 98 38.8
TAR633G0575 Trochodendron aralioides HOM05D007411 ORTHO05D009025 2.0e-06 57.0 82 40.2
FvH4_2g27291 Fragaria vesca HOM05D007411 ORTHO05D009025 9.8e-06 54.7 45 51.1
TAR633G1834 Trochodendron aralioides HOM05D007411 ORTHO05D009025 9.8e-06 54.7 85 37.6


User provided reference genes

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