Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.4e-53 212.6 100 100.0
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 2.8e-38 161.8 101 76.2
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 5.1e-32 141.0 101 71.3
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 1.3e-19 99.8 99 48.5
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 6.4e-19 97.4 98 50.0
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 8.1e-14 80.5 93 45.2
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 2.4e-13 79.0 52 63.5
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 3.1e-13 78.6 66 56.1
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 4.0e-13 78.2 57 56.1
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 5.3e-13 77.8 66 54.5
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 5.3e-13 77.8 40 75.0
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 9.0e-13 77.0 42 69.0
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 1.2e-12 76.6 40 75.0
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.2e-12 76.6 46 69.6
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.5e-12 76.3 39 74.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 2.6e-12 75.5 40 75.0
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 3.4e-12 75.1 60 51.7
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 3.4e-12 75.1 50 62.0
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.5e-12 74.7 75 44.0
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.5e-12 74.7 90 42.2
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 4.5e-12 74.7 39 71.8
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 5.8e-12 74.3 40 70.0
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 5.8e-12 74.3 37 75.7
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 7.6e-12 73.9 46 65.2
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 7.6e-12 73.9 58 56.9
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 1.0e-11 73.6 40 67.5
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 1.0e-11 73.6 40 72.5
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.0e-11 73.6 62 56.5
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.0e-11 73.6 40 72.5
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.3e-11 73.2 42 61.9
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.3e-11 73.2 67 52.2
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 1.7e-11 72.8 51 54.9
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.7e-11 72.8 51 52.9
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 2.2e-11 72.4 39 71.8
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 2.9e-11 72.0 40 67.5
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 3.8e-11 71.6 42 71.4
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 3.8e-11 71.6 40 65.0
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 3.8e-11 71.6 58 56.9
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 4.9e-11 71.2 62 48.4
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 4.9e-11 71.2 38 68.4
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 4.9e-11 71.2 42 64.3
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 6.5e-11 70.9 60 55.0
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.5e-11 70.9 53 54.7
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 6.5e-11 70.9 53 54.7
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 1.1e-10 70.1 39 71.8
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.1e-10 70.1 47 55.3
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.1e-10 70.1 60 51.7
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 1.1e-10 70.1 61 47.5
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.4e-10 69.7 40 65.0
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 2.5e-10 68.9 38 65.8
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 2.5e-10 68.9 67 43.3
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 2.5e-10 68.9 101 40.6
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.2e-10 68.6 40 65.0
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 4.2e-10 68.2 40 62.5
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 5.5e-10 67.8 66 48.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 5.5e-10 67.8 39 69.2
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 5.5e-10 67.8 39 69.2
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 7.1e-10 67.4 39 66.7
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 7.1e-10 67.4 39 69.2
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 9.3e-10 67.0 46 60.9
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 9.3e-10 67.0 38 60.5
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 1.2e-09 66.6 62 43.5
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 1.6e-09 66.2 67 46.3
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 1.6e-09 66.2 52 55.8
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.6e-09 66.2 89 40.4
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.6e-09 66.2 52 55.8
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.1e-09 65.9 76 46.1
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 2.1e-09 65.9 77 48.1
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 2.7e-09 65.5 37 70.3
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.5e-09 65.1 44 63.6
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 3.5e-09 65.1 43 58.1
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 3.5e-09 65.1 62 48.4
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 4.6e-09 64.7 54 55.6
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 4.6e-09 64.7 40 57.5
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 4.6e-09 64.7 37 64.9
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 6.0e-09 64.3 37 67.6
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 6.0e-09 64.3 37 67.6
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 6.0e-09 64.3 37 67.6
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 6.0e-09 64.3 37 67.6
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 6.0e-09 64.3 37 67.6
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 6.0e-09 64.3 67 41.8
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 6.0e-09 64.3 99 36.4
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 6.0e-09 64.3 39 66.7
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 7.9e-09 63.9 37 70.3
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 7.9e-09 63.9 39 61.5
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.0e-08 63.5 43 62.8
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.0e-08 63.5 37 70.3
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.3e-08 63.2 45 53.3
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.3e-08 63.2 43 60.5
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.8e-08 62.8 40 60.0
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.8e-08 62.8 40 60.0
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 1.8e-08 62.8 101 37.6
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 2.3e-08 62.4 37 62.2
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 2.3e-08 62.4 68 41.2
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 3.0e-08 62.0 67 40.3
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 3.9e-08 61.6 37 67.6
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.9e-08 61.6 52 53.8
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 3.9e-08 61.6 37 62.2
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 3.9e-08 61.6 37 67.6
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 3.9e-08 61.6 37 62.2
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 3.9e-08 61.6 37 62.2
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 6.7e-08 60.8 37 67.6
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.5e-07 59.7 39 61.5
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.5e-07 59.7 37 64.9
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.5e-07 59.7 37 64.9
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.5e-07 59.7 37 64.9
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.5e-07 59.7 37 62.2
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 1.5e-07 59.7 38 60.5
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 1.9e-07 59.3 37 62.2
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 2.5e-07 58.9 37 56.8
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 3.3e-07 58.5 37 62.2
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 4.3e-07 58.2 37 62.2
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 4.3e-07 58.2 37 62.2
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 7.4e-07 57.4 37 62.2
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 7.4e-07 57.4 43 53.5
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 9.6e-07 57.0 37 62.2
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 9.6e-07 57.0 37 62.2
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 9.6e-07 57.0 35 57.1
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.3e-06 56.6 30 80.0
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.3e-06 56.6 35 57.1
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 1.3e-06 56.6 39 59.0
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.6e-06 56.2 98 38.8
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 2.1e-06 55.8 37 59.5
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 2.1e-06 55.8 37 59.5
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 2.8e-06 55.5 40 60.0
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 2.8e-06 55.5 62 48.4
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 3.7e-06 55.1 41 61.0
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 4.8e-06 54.7 42 52.4
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 8.2e-06 53.9 37 56.8
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 8.2e-06 53.9 56 42.9
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 8.2e-06 53.9 37 59.5


User provided reference genes

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