Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 0.0e+00 1252.7 658 100.0
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 4.8e-296 1020.8 634 85.8
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 4.9e-293 1010.7 651 83.3
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 3.0e-250 868.6 642 73.5
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.7e-240 836.3 636 71.4
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 2.2e-240 835.9 650 70.9
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 3.8e-237 825.1 653 70.9
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 6.1e-235 817.8 638 69.7
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.1e-223 780.4 636 68.4
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 8.6e-213 744.2 474 83.8
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 2.2e-200 703.0 651 61.3
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 7.8e-198 694.5 649 60.6
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 2.1e-195 686.4 648 60.0
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 1.7e-189 666.8 655 58.5
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.0e-189 666.0 645 58.4
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 4.8e-187 658.7 645 57.4
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 8.1e-187 657.9 647 58.7
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 8.1e-187 657.9 655 57.6
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 8.1e-187 657.9 647 58.6
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 4.0e-186 655.6 649 57.3
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 1.2e-185 654.1 649 58.9
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 7.6e-185 651.4 649 56.9
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.2e-184 649.8 646 58.4
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 4.9e-184 648.7 646 58.4
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.6e-182 643.7 654 57.0
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.1e-182 643.3 655 57.6
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 3.5e-182 642.5 654 57.0
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 7.9e-182 641.3 655 57.4
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 3.3e-180 636.0 626 58.5
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 5.6e-180 635.2 652 56.4
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 9.6e-180 634.4 672 54.9
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 4.5e-177 625.5 650 55.7
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 1.7e-176 623.6 635 57.3
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 3.2e-175 619.4 652 55.4
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 1.0e-173 614.4 447 74.7
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 2.3e-173 613.2 683 53.1
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 3.0e-173 612.8 646 56.0
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.5e-172 610.5 670 54.3
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 1.4e-170 604.0 664 54.1
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.1e-170 602.8 674 52.8
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 3.1e-170 602.8 674 52.8
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 1.4e-167 594.0 646 54.2
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 4.2e-167 592.4 711 50.8
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 7.2e-167 591.7 614 54.7
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 1.8e-165 587.0 649 52.7
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.5e-164 583.2 640 54.8
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 6.3e-163 578.6 659 51.4
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 1.8e-162 577.0 646 53.6
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 6.9e-162 575.1 756 48.4
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 6.9e-162 575.1 679 52.6
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.2e-161 574.3 641 52.3
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.2e-160 570.1 610 55.1
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 1.0e-157 561.2 522 60.0
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 3.9e-157 559.3 644 51.2
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 2.5e-156 556.6 644 50.9
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 5.7e-156 555.4 657 51.9
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 1.3e-155 554.3 644 50.9
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 2.2e-155 553.5 645 51.3
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 4.8e-155 552.4 646 51.1
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.4e-154 550.1 793 45.6
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 3.4e-153 546.2 639 49.8
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 7.7e-153 545.0 639 49.1
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 7.7e-153 545.0 599 54.3
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 2.2e-152 543.5 642 49.8
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 1.5e-148 530.8 639 48.8
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 4.8e-147 525.8 670 47.5
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 6.3e-147 525.4 661 48.1
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 8.2e-147 525.0 639 48.4
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 4.1e-146 522.7 663 49.2
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 2.6e-145 520.0 667 46.9
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 7.7e-145 518.5 621 51.9
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 1.3e-144 517.7 667 46.6
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.5e-143 514.2 641 47.6
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 3.2e-143 513.1 667 46.3
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 3.2e-143 513.1 692 45.8
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 2.7e-142 510.0 653 48.4
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 5.2e-141 505.8 670 48.2
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 2.6e-140 503.4 646 47.7
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 4.4e-140 502.7 692 45.4
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 2.9e-136 490.0 526 53.8
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 2.2e-131 473.8 651 44.2
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.4e-130 471.1 647 44.4
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 3.1e-130 469.9 629 46.4
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 2.1e-126 457.2 444 58.3
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 2.8e-123 446.8 664 42.9
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 1.1e-122 444.9 594 46.6
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 3.4e-116 423.3 473 53.1
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.7e-115 421.0 422 57.8
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 3.2e-114 416.8 654 40.7
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 6.6e-112 409.1 709 39.2
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 9.5e-111 405.2 644 42.5
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 1.4e-109 401.4 530 48.1
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.3e-107 394.8 641 43.4
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.7e-107 394.4 671 39.9
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 3.5e-105 386.7 638 39.8
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 7.3e-103 379.0 499 48.5
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.2e-100 371.7 659 38.7
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 4.3e-95 353.2 460 48.0
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 7.3e-95 352.4 498 44.2
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 8.1e-94 349.0 637 38.1
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 4.9e-91 339.7 423 50.4
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 6.9e-77 292.7 827 32.9
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.2e-66 257.3 211 64.5
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 7.9e-65 252.7 312 52.9
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 8.1e-62 242.7 501 35.5
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 1.7e-59 235.0 333 48.3
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 3.3e-55 220.7 178 65.7
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 2.1e-54 218.0 266 54.1
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 8.2e-54 216.1 806 27.2
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 9.0e-53 212.6 320 45.0
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 5.9e-52 209.9 207 56.0
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 1.1e-50 205.7 741 28.1
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.1e-49 199.9 148 70.3
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 3.1e-45 187.6 150 64.0
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.9e-42 178.3 218 46.8
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 9.1e-37 159.5 194 48.5
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 5.9e-28 130.2 177 40.7
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 4.4e-23 114.0 99 61.6
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 2.5e-18 98.2 71 69.0
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.5e-18 97.1 94 60.6
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 7.2e-18 96.7 91 61.5
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 3.6e-17 94.4 90 64.4
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.6e-12 79.0 116 40.5
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 5.0e-11 73.9 45 77.8
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 2.8e-09 68.2 131 40.5
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 8.0e-09 66.6 95 41.1
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 3.4e-07 61.2 58 62.1
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 7.5e-07 60.1 86 39.5


User provided reference genes

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