Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 9.3e-301 1036.2 556 100.0
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 3.2e-200 702.2 521 75.2
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.8e-179 633.3 520 69.0
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.9e-173 613.2 519 67.6
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 9.3e-160 567.8 526 61.4
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.3e-156 557.4 529 60.7
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.2e-153 546.6 537 58.8
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 4.6e-151 538.9 526 59.9
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 5.3e-147 525.4 533 57.8
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 5.3e-147 525.4 533 57.8
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.2e-144 515.8 529 58.2
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 7.2e-144 515.0 339 76.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 4.5e-138 495.7 526 56.1
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 9.4e-136 488.0 523 53.9
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 3.0e-134 483.0 517 55.1
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 4.4e-133 479.2 539 55.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 7.5e-133 478.4 522 52.9
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 4.8e-132 475.7 520 52.9
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 4.8e-132 475.7 524 53.6
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.2e-132 474.9 513 53.8
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 2.4e-131 473.4 512 55.1
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.6e-130 470.7 512 54.3
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 2.0e-130 470.3 524 54.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.7e-130 469.9 532 52.8
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 4.5e-130 469.2 522 52.3
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.1e-128 464.5 526 52.7
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.1e-128 464.5 536 52.2
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 1.5e-128 464.2 536 51.9
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 2.5e-128 463.4 520 52.1
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.1e-127 460.3 534 51.3
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 3.6e-127 459.5 512 53.3
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.4e-126 457.6 535 51.2
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.0e-126 456.4 540 50.9
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 8.8e-126 454.9 512 54.7
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.6e-125 453.4 512 52.0
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 5.7e-125 452.2 507 53.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 4.8e-124 449.1 530 52.6
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.4e-123 445.7 524 50.2
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.6e-122 444.1 511 52.1
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 7.7e-122 441.8 497 51.3
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 8.6e-121 438.3 533 51.4
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 4.2e-120 436.0 498 52.0
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 9.5e-120 434.9 535 50.5
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.2e-119 434.5 509 50.5
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.1e-119 433.7 509 51.1
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 2.1e-119 433.7 529 49.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.1e-119 433.7 348 65.8
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.8e-119 433.3 491 52.5
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 8.0e-119 431.8 509 50.5
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.0e-118 429.9 348 65.2
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 4.0e-118 429.5 507 50.7
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.2e-117 427.9 525 49.7
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.0e-117 427.2 524 48.3
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 3.4e-117 426.4 527 49.7
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 4.4e-117 426.0 560 47.0
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 4.4e-117 426.0 513 49.3
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 1.7e-116 424.1 518 49.6
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.7e-116 424.1 518 49.0
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.2e-116 423.7 520 47.9
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 4.9e-116 422.5 521 48.9
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 6.3e-116 422.2 529 49.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 6.3e-116 422.2 527 48.6
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.1e-115 421.4 532 48.1
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.1e-115 421.4 493 52.5
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.4e-115 421.0 509 50.9
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 1.8e-115 420.6 518 49.8
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 4.1e-115 419.5 494 50.6
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.2e-114 417.9 529 48.4
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.2e-114 417.9 343 61.8
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.0e-114 417.2 518 47.5
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 2.0e-114 417.2 513 49.5
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.7e-114 416.8 527 48.8
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 1.0e-113 414.8 526 48.3
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.3e-113 414.5 486 50.6
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 6.6e-113 412.1 526 47.0
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.5e-112 410.2 486 50.4
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 3.3e-112 409.8 494 49.2
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.6e-111 407.5 491 49.5
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 3.6e-111 406.4 518 46.9
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 6.1e-111 405.6 508 48.6
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.3e-110 403.7 521 47.6
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.2e-109 401.4 494 50.0
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.5e-109 401.0 526 46.6
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 3.4e-109 399.8 357 60.5
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 4.4e-109 399.4 502 46.8
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 7.5e-109 398.7 529 46.5
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 5.9e-106 389.0 484 48.6
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 3.6e-103 379.8 534 45.5
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.4e-102 377.9 558 43.7
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 5.2e-102 375.9 512 44.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 9.2e-99 365.2 483 46.4
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.0e-97 360.1 351 55.6
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 8.6e-97 358.6 534 43.8
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 4.3e-96 356.3 324 58.0
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 2.6e-93 347.1 572 41.8
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 5.8e-93 345.9 344 52.6
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 6.8e-86 322.4 563 41.6
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.3e-84 318.2 533 39.0
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.8e-78 297.7 232 65.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 7.3e-72 275.8 166 84.3
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.6e-71 274.6 293 54.3
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 6.2e-71 272.7 326 48.8
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.6e-69 267.3 376 42.0
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.3e-68 265.0 384 40.6
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.2e-66 258.5 206 67.0
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.1e-62 245.4 366 40.4
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.1e-62 243.8 270 51.5
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 2.9e-60 237.3 181 64.1
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.9e-59 234.6 219 58.0
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 2.7e-58 230.7 283 55.5
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.5e-53 214.9 174 64.4
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 6.7e-49 199.5 174 60.3
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.6e-47 194.9 189 54.0
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.2e-44 184.5 155 58.7
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 8.5e-44 182.6 344 36.3
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 1.9e-43 181.4 409 33.5
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 9.7e-40 169.1 267 41.9
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.4e-37 160.6 319 39.8
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 3.4e-37 160.6 301 38.5
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 3.9e-33 147.1 508 28.1
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 6.7e-25 119.8 63 88.9
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 8.2e-23 112.8 63 84.1
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.1e-18 98.2 66 72.7
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.7e-13 81.3 55 69.1
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 4.2e-11 73.9 101 43.6
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.7e-07 62.0 122 36.1


User provided reference genes

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