Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1467.2 755 100.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1359.4 756 92.5
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1283.5 756 86.9
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1280.4 756 86.5
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1279.6 756 87.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1276.2 756 86.9
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1265.4 756 86.4
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1264.2 756 86.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1240.3 753 84.9
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1239.2 753 84.9
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 0.0e+00 1157.5 634 93.1
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1140.9 758 77.0
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1139.0 758 77.2
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1131.7 758 76.5
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1127.9 747 75.6
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1115.1 774 73.5
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1114.0 757 74.6
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1110.5 756 74.7
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1107.0 774 73.9
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1105.9 774 73.9
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1104.7 756 74.1
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1103.6 758 74.3
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1102.0 746 75.5
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1096.3 762 74.4
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1095.1 756 73.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1089.3 759 74.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1088.9 758 74.3
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1077.8 759 73.5
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1075.5 753 71.8
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 2.1e-311 1072.0 751 73.1
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 4.6e-311 1070.8 756 72.0
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 4.6e-311 1070.8 754 72.4
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 4.6e-311 1070.8 757 72.1
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.0e-310 1069.7 748 73.0
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 3.0e-310 1068.1 749 73.8
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 6.7e-310 1067.0 758 72.7
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.1e-309 1066.2 747 71.6
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.1e-309 1066.2 649 86.3
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 2.5e-309 1065.1 758 72.4
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.3e-309 1064.7 758 72.6
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 4.3e-309 1064.3 756 71.7
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 5.6e-309 1063.9 754 72.4
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.8e-308 1060.8 748 72.2
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 2.4e-307 1058.5 751 71.4
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 2.6e-306 1055.0 753 70.5
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 2.9e-305 1051.6 758 71.2
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 2.5e-304 1048.5 756 71.7
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 4.2e-304 1047.7 782 69.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 9.3e-304 1046.6 756 70.0
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 6.0e-303 1043.9 752 72.1
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 7.9e-303 1043.5 756 70.6
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 2.5e-301 1038.5 745 70.6
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 3.7e-300 1034.6 756 70.0
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 2.4e-299 1031.9 757 69.6
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.1e-296 1023.1 745 69.3
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.5e-296 1021.9 759 67.5
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 3.0e-294 1015.0 758 68.9
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.5e-293 1012.7 754 68.7
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 3.3e-293 1011.5 745 69.3
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 7.4e-293 1010.4 758 67.3
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 750 68.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 5.3e-291 1004.2 747 67.7
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 6.9e-291 1003.8 758 66.8
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 2.0e-290 1002.3 745 68.9
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.0e-290 1002.3 706 71.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.4e-288 996.1 745 68.3
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 5.1e-286 987.6 763 65.7
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 6.7e-286 987.3 757 67.4
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 8.8e-286 986.9 748 67.2
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 2.0e-285 985.7 745 66.7
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 3.4e-282 974.9 745 67.0
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 3.4e-282 974.9 745 67.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.7e-281 972.6 776 64.9
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.7e-281 972.6 774 67.2
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 8.5e-281 970.3 746 66.6
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.1e-280 969.9 772 64.6
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 5.5e-280 967.6 748 66.0
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 7.2e-280 967.2 745 66.6
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 7.2e-280 967.2 745 66.6
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 2.7e-279 965.3 745 66.6
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 2.7e-279 965.3 745 66.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 4.7e-279 964.5 749 67.2
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 7.9e-279 963.8 746 66.2
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 7.9e-279 963.8 746 66.2
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 7.9e-279 963.8 749 66.9
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.4e-278 963.0 753 66.3
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 8.8e-278 960.3 745 65.2
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.5e-277 959.5 755 64.8
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 2.0e-277 959.1 748 66.2
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 6.3e-276 954.1 745 65.2
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.6e-274 949.5 744 64.9
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 2.6e-274 948.7 755 65.4
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 8.5e-273 943.7 686 70.6
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.0e-270 934.9 745 65.4
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 9.1e-267 923.7 757 64.2
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 2.5e-264 915.6 750 64.0
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 5.7e-261 904.4 755 62.4
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 3.7e-260 901.7 694 66.9
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.6e-258 896.3 746 61.9
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 9.8e-253 877.1 733 61.8
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 4.5e-250 868.2 747 60.4
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.3e-249 866.7 747 58.9
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 4.7e-247 858.2 659 65.6
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 8.3e-244 847.4 753 58.8
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 2.4e-243 845.9 758 59.5
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 2.4e-243 845.9 757 59.7
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 2.7e-242 842.4 811 56.8
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.5e-240 836.6 748 59.6
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.5e-240 836.6 748 59.6
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 5.8e-237 824.7 728 60.3
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 4.1e-227 792.0 758 55.1
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.4e-214 750.4 528 71.8
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.4e-211 740.3 747 53.9
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.2e-211 739.2 730 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.5e-205 720.3 754 51.7
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.4e-204 714.5 528 68.6
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.4e-203 713.8 536 67.7
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 6.7e-201 704.9 756 51.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.1e-200 704.1 534 66.1
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.9e-196 689.5 529 67.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 7.1e-195 684.9 747 50.6
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.8e-183 646.4 738 47.4
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-169 600.9 473 71.7
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.0e-169 599.7 752 48.3
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 2.8e-167 593.2 379 80.2
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.0e-153 548.1 600 49.7
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.7e-132 477.6 375 64.3
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 7.5e-120 435.6 345 63.5
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.3e-108 398.3 728 33.9
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.4e-86 324.3 754 29.2
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.8e-81 308.1 833 29.3
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.5e-78 296.6 222 70.3
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.7e-77 294.3 227 64.3
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.1e-73 280.8 516 38.6
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.0e-56 224.9 202 63.4
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.1e-53 214.9 212 56.1
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 3.4e-48 197.6 124 81.5
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 4.5e-48 197.2 136 77.2
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.6e-45 187.6 102 95.1
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 5.5e-38 163.7 197 49.2
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.3e-31 142.5 91 76.9
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 4.7e-29 134.0 112 59.8
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 4.8e-26 124.0 240 38.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.8e-26 124.0 100 63.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.1e-25 122.9 88 68.2
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 3.5e-24 117.9 92 71.7
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 5.0e-23 114.0 81 75.3
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 9.5e-22 109.8 230 35.7
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 4.0e-20 104.4 67 79.1
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-19 101.3 101 55.4
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.2e-18 98.6 74 66.2
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.2e-18 98.6 56 92.9
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.9e-18 97.4 217 33.6
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.6e-16 92.4 98 48.0
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 2.0e-16 92.0 55 81.8
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.1e-14 86.3 95 43.2
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.2e-11 76.3 139 33.8
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 3.4e-11 74.7 117 40.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 4.4e-11 74.3 65 58.5
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 2.9e-10 71.6 65 56.9
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 8.3e-10 70.1 65 53.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.9e-09 68.9 63 57.1
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 5.6e-06 57.4 55 58.2


User provided reference genes

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