Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g068980 Medicago truncatula HOM05D006264 ORTHO05D007739 8.8e-50 199.9 96 100.0
Medtr3g088580 Medicago truncatula HOM05D006264 ORTHO05D007739 8.9e-42 173.3 82 98.8
TPR.G13464 Trifolium pratense HOM05D006264 ORTHO05D007739 1.7e-40 169.1 82 95.1
Psat5g086280 Pisum sativum HOM05D006264 ORTHO05D007739 7.8e-38 160.2 82 89.0
arahy.Tifrunner.gnm1.ann1.9W7Z3M Arachis hypogaea HOM05D006264 ORTHO05D007739 1.0e-37 159.8 82 86.6
arahy.Tifrunner.gnm1.ann1.W8H4W4 Arachis hypogaea HOM05D006264 ORTHO05D007739 1.0e-37 159.8 82 86.6
arahy.Tifrunner.gnm1.ann1.YYE7NP Arachis hypogaea HOM05D006264 ORTHO05D007739 1.0e-37 159.8 82 86.6
Ca_27657_v3 Cicer arietinum L. HOM05D006264 ORTHO05D007739 1.3e-37 159.5 82 87.8
Lalb_Chr11g0066051 Lupinus albus HOM05D006264 ORTHO05D007739 5.0e-37 157.5 82 87.8
Lj1g0001411 Lotus japonicus HOM05D006264 ORTHO05D007739 6.6e-37 157.1 82 86.6
Lalb_Chr08g0241301 Lupinus albus HOM05D006264 ORTHO05D007739 3.3e-36 154.8 82 85.4
Ciclev10001823m.g Citrus clementina HOM05D006264 ORTHO05D007739 9.5e-36 153.3 82 80.5
Glyma.06G115200 Glycine max HOM05D006264 ORTHO05D007739 9.5e-36 153.3 82 86.6
Phvul.009G127300 Phaseolus vulgaris HOM05D006264 ORTHO05D007739 2.1e-35 152.1 82 84.1
Glyma.04G247500 Glycine max HOM05D006264 ORTHO05D007739 6.1e-35 150.6 82 84.1
QL09p034323 Quercus lobata HOM05D006264 ORTHO05D007739 8.0e-35 150.2 82 80.5
CsaV3_4G028200 Cucumis sativus L. HOM05D006264 ORTHO05D007739 1.4e-34 149.4 82 80.5
AT1G21760 Arabidopsis thaliana HOM05D006264 ORTHO05D007739 3.1e-34 148.3 84 77.4
THA.LOC104810199 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 3.1e-34 148.3 84 79.8
Thecc.08G126800 Theobroma cacao HOM05D006264 ORTHO05D007739 3.1e-34 148.3 82 80.5
VMungo1309G2910 Vigna mungo HOM05D006264 ORTHO05D007739 3.1e-34 148.3 82 80.5
CiPaw.05G220800 Carya illinoinensis HOM05D006264 ORTHO05D007739 1.2e-33 146.4 82 78.0
Sed0004807 Sechium edule HOM05D006264 ORTHO05D007739 1.5e-33 146.0 82 79.3
MELO3C010482.2 Cucumis melo HOM05D006264 ORTHO05D007739 2.0e-33 145.6 82 78.0
FAN24G2929 Fragaria x ananassa HOM05D006264 ORTHO05D007739 5.8e-33 144.1 82 79.3
ClCG11G015780 Citrullus lanatus HOM05D006264 ORTHO05D007739 9.8e-33 143.3 82 75.6
Aa31LG7G5740 Aethionema arabicum HOM05D006264 ORTHO05D007739 1.3e-32 142.9 84 75.0
FAN15G0088 Fragaria x ananassa HOM05D006264 ORTHO05D007739 1.3e-32 142.9 82 78.0
FAN20G0424 Fragaria x ananassa HOM05D006264 ORTHO05D007739 1.3e-32 142.9 82 78.0
MD15G1347000 Malus domestica HOM05D006264 ORTHO05D007739 1.3e-32 142.9 82 76.8
FvH4_2g27090 Fragaria vesca HOM05D006264 ORTHO05D007739 1.7e-32 142.5 82 78.0
Sabra02G0064700 Salix brachista HOM05D006264 ORTHO05D007739 2.2e-32 142.1 82 75.6
Cpa.g.sc418.8 Carica papaya HOM05D006264 ORTHO05D007739 6.4e-32 140.6 79 79.7
Potri.002G082500 Populus trichocarpa HOM05D006264 ORTHO05D007739 6.4e-32 140.6 82 73.2
COL.COLO4_04990 Corchorus olitorius HOM05D006264 ORTHO05D007739 8.3e-32 140.2 82 78.0
Eucgr.F04347 Eucalyptus grandis HOM05D006264 ORTHO05D007739 8.3e-32 140.2 82 74.4
Lj4C628G13 Lonicera japonica HOM05D006264 ORTHO05D007739 1.1e-31 139.8 82 72.0
CARHR022150 Cardamine hirsuta HOM05D006264 ORTHO05D007739 2.4e-31 138.7 84 73.8
Gohir.A06G045300 Gossypium hirsutum HOM05D006264 ORTHO05D007739 2.4e-31 138.7 84 77.4
Prupe.1G494700 Prunus persica HOM05D006264 ORTHO05D007739 2.4e-31 138.7 82 73.2
RcHm_v2.0_Chr6g0295971 Rosa chinensis HOM05D006264 ORTHO05D007739 3.2e-31 138.3 82 75.6
BcaB07g32175 Brassica carinata HOM05D006264 ORTHO05D007739 4.1e-31 137.9 84 72.6
BcaC05g26098 Brassica carinata HOM05D006264 ORTHO05D007739 4.1e-31 137.9 84 72.6
A06p17870 Brassica napus HOM05D006264 ORTHO05D007739 4.1e-31 137.9 84 72.6
Sp1g19320 Schrenkiella parvula HOM05D006264 ORTHO05D007739 4.1e-31 137.9 84 72.6
C05p20770 Brassica napus HOM05D006264 ORTHO05D007739 5.4e-31 137.5 80 75.0
BolC5t30776H Brassica oleracea HOM05D006264 ORTHO05D007739 5.4e-31 137.5 80 75.0
BraA06t24877Z Brassica rapa HOM05D006264 ORTHO05D007739 5.4e-31 137.5 80 75.0
CANSAT11G2315 Cannabis sativa HOM05D006264 ORTHO05D007739 5.4e-31 137.5 82 73.2
TAR381G1225 Trochodendron aralioides HOM05D006264 ORTHO05D007739 5.4e-31 137.5 82 72.0
GSVIVG01008855001 Vitis vinifera HOM05D006264 ORTHO05D007739 7.0e-31 137.1 82 75.6
Rhsim11G0069200 Rhododendron simsii HOM05D006264 ORTHO05D007739 9.2e-31 136.7 82 68.3
Carub.0001s2122 Capsella rubella HOM05D006264 ORTHO05D007739 2.0e-30 135.6 84 72.6
Dinv27304 Davidia involucrata HOM05D006264 ORTHO05D007739 2.7e-30 135.2 82 69.5
Duzib093G0816 Durio zibethinus HOM05D006264 ORTHO05D007739 6.0e-30 134.0 83 71.1
vmacro00839 Vaccinium macrocarpon HOM05D006264 ORTHO05D007739 6.0e-30 134.0 82 67.1
Actinidia29470 Actinidia chinensis HOM05D006264 ORTHO05D007739 7.8e-30 133.7 82 67.1
PGR044G1646 Punica granatum HOM05D006264 ORTHO05D007739 7.8e-30 133.7 78 74.4
Manes.02G164400 Manihot esculenta HOM05D006264 ORTHO05D007739 1.7e-29 132.5 82 68.3
Potri.005G178600 Populus trichocarpa HOM05D006264 ORTHO05D007739 2.3e-29 132.1 82 69.5
HanXRQChr05g0151071 Helianthus annuus HOM05D006264 ORTHO05D007739 3.0e-29 131.7 82 68.3
Gohir.D06G045800 Gossypium hirsutum HOM05D006264 ORTHO05D007739 3.9e-29 131.3 79 77.2
Gorai.010G051000 Gossypium raimondii HOM05D006264 ORTHO05D007739 3.9e-29 131.3 79 77.2
Nn1g08814 Nelumbo nucifera HOM05D006264 ORTHO05D007739 1.1e-28 129.8 80 70.0
CSS0035031 Camellia sinensis var. sinensis HOM05D006264 ORTHO05D007739 1.9e-28 129.0 82 67.1
Oeu040415.1 Olea europaea HOM05D006264 ORTHO05D007739 3.3e-28 128.3 82 65.9
TWI60G1034 Tripterygium wilfordii HOM05D006264 ORTHO05D007739 2.1e-27 125.6 82 70.7
Cc10_g12020 Coffea canephora HOM05D006264 ORTHO05D007739 2.3e-26 122.1 77 64.9
TAR625G1219 Trochodendron aralioides HOM05D006264 ORTHO05D007739 3.1e-26 121.7 82 59.8
Aqoxy6G00234 Aquilegia oxysepala HOM05D006264 ORTHO05D007739 2.6e-25 118.6 75 68.0
ECA246G2185 Erigeron canadensis HOM05D006264 ORTHO05D007739 5.8e-25 117.5 77 62.3
Atru.chr13.1492 Acer truncatum HOM05D006264 ORTHO05D007739 7.5e-25 117.1 71 74.6
Haze_00430 Corylus avellana HOM05D006264 ORTHO05D007739 9.8e-25 116.7 82 67.1
MSTRG.1441 Avicennia marina HOM05D006264 ORTHO05D007739 2.2e-24 115.5 82 57.3
Nitab4.5_0001803g0010 Nicotiana tabacum HOM05D006264 ORTHO05D007739 2.9e-24 115.2 82 59.8
Nitab4.5_0001996g0020 Nicotiana tabacum HOM05D006264 ORTHO05D007739 2.9e-24 115.2 82 59.8
Hund17298 Selenicereus undatus HOM05D006264 ORTHO05D007739 2.9e-24 115.2 78 64.1
Sc02g0005000 Simmondsia chinensis HOM05D006264 ORTHO05D007739 1.9e-23 112.5 75 61.3
CAN.G2.26 Capsicum annuum HOM05D006264 ORTHO05D007739 3.5e-22 108.2 82 54.9
Peaxi162Scf00914g00315 Petunia axillaris HOM05D006264 ORTHO05D007739 3.5e-22 108.2 72 63.9
PGSC0003DMG400000884 Solanum tuberosum HOM05D006264 ORTHO05D007739 3.5e-22 108.2 82 54.9
CDE02G1850 Ceratophyllum demersum HOM05D006264 ORTHO05D007739 6.0e-22 107.5 83 54.2
Solyc11g012830.3 Solanum lycopersicum HOM05D006264 ORTHO05D007739 6.0e-22 107.5 82 54.9
SGA_v2.0_scaffold24G10459 Striga asiatica HOM05D006264 ORTHO05D007739 7.8e-22 107.1 75 56.0
MBI16_g07653_MAGBIO Magnolia biondii HOM05D006264 ORTHO05D007739 1.7e-21 105.9 82 56.1
EL10Ac1g01023 Beta vulgaris HOM05D006264 ORTHO05D007739 2.5e-20 102.1 78 56.4
Lsat_1_v5_gn_6_112861 Lactuca sativa HOM05D006264 ORTHO05D007739 4.3e-20 101.3 82 57.3
Os04g0431200 Oryza sativa ssp. japonica HOM05D006264 ORTHO05D007739 2.1e-19 99.0 80 52.5
AUR62014328 Chenopodium quinoa HOM05D006264 ORTHO05D007739 4.7e-19 97.8 78 56.4
Migut.C01127 Erythranthe guttata HOM05D006264 ORTHO05D007739 6.2e-19 97.4 75 53.3
AUR62019071 Chenopodium quinoa HOM05D006264 ORTHO05D007739 1.4e-18 96.3 78 55.1
unitig_748.g7689 Utricularia gibba HOM05D006264 ORTHO05D007739 1.4e-18 96.3 61 65.6
ATR0584G291 Amborella trichopoda HOM05D006264 ORTHO05D007739 2.6e-17 92.0 72 55.6
PSO528G0109 Papaver somniferum HOM05D006264 ORTHO05D007739 2.6e-17 92.0 59 64.4
Pp3c3_38060 Physcomitrium patens HOM05D006264 ORTHO05D007739 5.8e-17 90.9 62 62.9
PSO063G0125 Papaver somniferum HOM05D006264 ORTHO05D007739 9.9e-17 90.1 59 62.7
Zm00001eb422580 Zea mays HOM05D006264 ORTHO05D007739 9.9e-17 90.1 82 45.1
Mapoly0151s0012 Marchantia polymorpha HOM05D006264 ORTHO05D007739 1.3e-16 89.7 73 53.4
PSO170G1538 Papaver somniferum HOM05D006264 ORTHO05D007739 2.2e-16 89.0 59 62.7
HPP92_027807 Vanilla planifolia HOM05D006264 ORTHO05D007739 1.1e-15 86.7 84 46.4
HPP92_004401 Vanilla planifolia HOM05D006264 ORTHO05D007739 2.4e-15 85.5 79 48.1
SMO347G0097 Selaginella moellendorffii HOM05D006264 ORTHO05D007739 7.8e-14 80.5 66 54.5
AagrBONN_evm.TU.Sc2ySwM_117.473 Anthoceros agrestis HOM05D006264 ORTHO05D007739 1.5e-12 76.3 66 54.5
PGSC0003DMG400006698 Solanum tuberosum HOM05D006264 ORTHO05D007739 3.3e-12 75.1 70 48.6
CBR_g39544 Chara braunii HOM05D006264 ORTHO05D007739 4.7e-11 71.2 57 50.9
SEGI_08627 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 4.2e-07 58.2 40 57.5


User provided reference genes

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