Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g068560 Medicago truncatula HOM05D008520 ORTHO05D009890 2.8e-35 151.4 75 100.0
Medtr4g068453 Medicago truncatula HOM05D008520 ORTHO05D009890 1.7e-19 99.0 75 70.7
Glyma.12G048000 Glycine max HOM05D008520 ORTHO05D009890 7.2e-15 83.6 79 59.5
Glyma.11G123300 Glycine max HOM05D008520 ORTHO05D009890 6.1e-14 80.5 78 61.5
Phvul.011G050000 Phaseolus vulgaris HOM05D008520 ORTHO05D009890 4.0e-13 77.8 76 59.2
Lj3g0002198 Lotus japonicus HOM05D008520 ORTHO05D009890 3.4e-12 74.7 83 55.4
Lalb_Chr01g0002971 Lupinus albus HOM05D008520 ORTHO05D009890 7.5e-12 73.6 79 55.7
Medtr1g034290 Medicago truncatula HOM05D008520 ORTHO05D009890 3.7e-11 71.2 73 49.3
TPR.G10234 Trifolium pratense HOM05D011423 ORTHO05D009890 8.3e-11 70.1 78 59.0
arahy.Tifrunner.gnm1.ann1.4L7A6H Arachis hypogaea HOM05D008520 ORTHO05D009890 2.4e-10 68.6 77 51.9
arahy.Tifrunner.gnm1.ann1.H0FE8D Arachis hypogaea HOM05D008520 ORTHO05D009890 2.4e-10 68.6 77 51.9
Glyma.07G163300 Glycine max HOM05D008520 ORTHO05D009890 4.1e-10 67.8 80 52.5
Thecc.02G029000 Theobroma cacao HOM05D008520 ORTHO05D009890 5.3e-10 67.4 75 52.0
Potri.004G148200 Populus trichocarpa HOM05D008520 ORTHO05D009890 9.1e-10 66.6 73 50.7
QL11p039275 Quercus lobata HOM05D008520 ORTHO05D009890 9.1e-10 66.6 74 43.2
Medtr1g034270 Medicago truncatula HOM05D008520 ORTHO05D009890 7.7e-09 63.5 73 46.6
Manes.15G145900 Manihot esculenta HOM05D008520 ORTHO05D009890 1.0e-08 63.2 73 46.6
Atru.chr5.2897 Acer truncatum HOM05D008520 ORTHO05D009890 1.3e-08 62.8 75 46.7
Glyma.20G008300 Glycine max HOM05D008520 ORTHO05D009890 1.3e-08 62.8 71 53.5
Haze_02458 Corylus avellana HOM05D008520 ORTHO05D009890 2.2e-08 62.0 78 52.6
FAN05G4777 Fragaria x ananassa HOM05D008520 ORTHO05D009890 2.2e-08 62.0 92 47.8
FAN15G0381 Fragaria x ananassa HOM05D008520 ORTHO05D009890 2.2e-08 62.0 92 47.8
FAN20G0555 Fragaria x ananassa HOM05D008520 ORTHO05D009890 2.2e-08 62.0 92 47.8
Potri.009G109300 Populus trichocarpa HOM05D008520 ORTHO05D009890 2.2e-08 62.0 75 49.3
Prupe.8G111600 Prunus persica HOM05D008520 ORTHO05D009890 2.9e-08 61.6 84 46.4
Prupe.8G112200 Prunus persica HOM05D008520 ORTHO05D009890 2.9e-08 61.6 84 46.4
Eucgr.G00506 Eucalyptus grandis HOM05D012043 ORTHO05D009890 5.0e-08 60.8 80 46.2
Atru.chr5.2895 Acer truncatum HOM05D008520 ORTHO05D009890 6.5e-08 60.5 75 42.7
FAN24G0814 Fragaria x ananassa HOM05D008520 ORTHO05D009890 6.5e-08 60.5 92 46.7
Gohir.D01G172800 Gossypium hirsutum HOM05D008520 ORTHO05D009890 6.5e-08 60.5 77 50.6
Gorai.002G214400 Gossypium raimondii HOM05D008520 ORTHO05D009890 6.5e-08 60.5 77 50.6
Sp3g29250 Schrenkiella parvula HOM05D011423 ORTHO05D009890 8.5e-08 60.1 79 43.0
Cfa004952 Carpinus fangiana HOM05D008520 ORTHO05D009890 1.1e-07 59.7 77 48.1
Lj2g0022497 Lotus japonicus HOM05D008520 ORTHO05D009890 1.5e-07 59.3 73 46.6
Phvul.003G011000 Phaseolus vulgaris HOM05D012043 ORTHO05D009890 1.5e-07 59.3 74 50.0
Ciclev10029756m.g Citrus clementina HOM05D008520 ORTHO05D009890 2.5e-07 58.5 75 46.7
Thhalv10022948m.g Eutrema salsugineum HOM05D011423 ORTHO05D009890 2.5e-07 58.5 79 43.0
AL3G47790 Arabidopsis lyrata HOM05D011423 ORTHO05D009890 3.2e-07 58.2 80 42.5
COL.COLO4_17779 Corchorus olitorius HOM05D008520 ORTHO05D009890 3.2e-07 58.2 76 44.7
Carub.0003s2983 Capsella rubella HOM05D011423 ORTHO05D009890 5.5e-07 57.4 81 42.0
CARHR106280 Cardamine hirsuta HOM05D011423 ORTHO05D009890 5.5e-07 57.4 80 45.0
Ca_12478_v3 Cicer arietinum L. HOM05D008520 ORTHO05D009890 5.5e-07 57.4 73 42.5
Gohir.A01G181700 Gossypium hirsutum HOM05D008520 ORTHO05D009890 5.5e-07 57.4 77 49.4
Haze_02459 Corylus avellana HOM05D008520 ORTHO05D009890 7.2e-07 57.0 77 51.9
Prupe.8G111800 Prunus persica HOM05D008520 ORTHO05D009890 9.4e-07 56.6 84 44.0
CSS0029741 Camellia sinensis var. sinensis HOM05D008520 ORTHO05D009890 1.6e-06 55.8 80 42.5
FvH4_2g07390 Fragaria vesca HOM05D008520 ORTHO05D009890 1.6e-06 55.8 89 46.1
C03p56720 Brassica napus HOM05D011423 ORTHO05D009890 2.1e-06 55.5 77 44.2
BolC3t17956H Brassica oleracea HOM05D011423 ORTHO05D009890 2.1e-06 55.5 77 44.2
THA.LOC109116249 Tarenaya hassleriana HOM05D011423 ORTHO05D009890 2.1e-06 55.5 75 45.3
AT2G15960 Arabidopsis thaliana HOM05D011423 ORTHO05D009890 2.7e-06 55.1 80 40.0
Prupe.8G112000 Prunus persica HOM05D008520 ORTHO05D009890 2.7e-06 55.1 85 41.2
BcaB08g34619 Brassica carinata HOM05D011423 ORTHO05D009890 3.6e-06 54.7 77 44.2
Ciclev10029754m.g Citrus clementina HOM05D008520 ORTHO05D009890 4.7e-06 54.3 73 45.2
Eucgr.G01536 Eucalyptus grandis HOM05D012043 ORTHO05D009890 4.7e-06 54.3 80 42.5
RcHm_v2.0_Chr6g0260831 Rosa chinensis HOM05D008520 ORTHO05D009890 4.7e-06 54.3 91 42.9
A03p45660 Brassica napus HOM05D011423 ORTHO05D009890 6.1e-06 53.9 76 44.7
BraA03t13698Z Brassica rapa HOM05D011423 ORTHO05D009890 6.1e-06 53.9 76 44.7
Sc18g0004830 Simmondsia chinensis HOM05D008520 ORTHO05D009890 6.1e-06 53.9 79 41.8
CiPaw.06G139100 Carya illinoinensis HOM05D012043 ORTHO05D009890 8.0e-06 53.5 75 42.7


User provided reference genes

Program Settings