Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 0.0e+00 1149.0 578 100.0
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.6e-279 964.5 567 86.8
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.8e-276 954.9 575 84.7
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.5e-261 906.0 568 81.3
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 7.5e-261 903.7 571 82.1
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 5.4e-259 897.5 525 86.1
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 9.1e-259 896.7 548 82.3
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.5e-258 894.8 564 80.7
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 3.8e-257 891.3 572 78.8
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.5e-256 889.4 507 87.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 4.3e-248 861.3 551 78.8
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.8e-246 855.9 571 76.5
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 4.0e-246 854.7 571 76.5
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 2.0e-245 852.4 528 81.4
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 3.6e-239 831.6 622 70.7
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.4e-221 771.5 487 78.4
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.1e-216 756.9 528 70.5
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.5e-216 755.7 486 75.5
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 4.3e-216 755.0 529 71.6
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 5.8e-213 744.6 534 69.7
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 5.8e-213 744.6 528 70.8
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 1.4e-211 740.0 529 69.8
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.4e-211 740.0 528 70.3
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.6e-210 736.5 541 68.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.6e-209 731.1 487 75.2
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 6.6e-209 731.1 537 67.8
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.3e-208 728.8 528 70.1
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.6e-207 726.5 528 68.0
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.4e-206 723.4 533 67.5
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 6.9e-206 721.1 515 69.5
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 9.0e-206 720.7 549 66.8
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 1.2e-205 720.3 551 67.7
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 4.5e-205 718.4 542 66.1
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 9.9e-205 717.2 554 64.4
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-204 716.5 528 67.4
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 2.2e-204 716.1 572 65.4
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.1e-203 713.8 531 67.8
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 2.4e-203 712.6 508 69.3
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.1e-203 711.1 578 63.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 9.3e-203 710.7 533 66.8
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.2e-202 710.3 533 66.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.5e-202 708.8 530 66.4
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 4.6e-202 708.4 496 71.0
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.3e-201 706.8 534 66.3
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 7.4e-200 701.0 554 64.4
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-198 697.2 531 64.8
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.4e-198 696.8 470 71.5
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.2e-197 693.7 528 68.6
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.0e-197 693.0 565 62.3
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.3e-196 690.3 527 64.5
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 2.2e-196 689.5 528 65.5
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.2e-196 689.5 559 62.8
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 6.4e-196 688.0 496 66.7
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.4e-195 686.0 495 67.9
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 9.3e-195 684.1 490 69.4
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 6.0e-194 681.4 484 68.2
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 3.9e-193 678.7 485 67.4
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.5e-192 676.8 529 64.5
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.7e-191 672.2 527 61.9
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 4.8e-191 671.8 513 65.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.4e-190 669.5 528 63.4
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.0e-190 668.7 531 62.0
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 9.0e-190 667.5 543 60.2
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-188 663.7 526 62.7
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.1e-187 660.6 534 64.4
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.5e-187 659.4 473 68.1
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.2e-187 659.1 486 65.4
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 9.3e-187 657.5 514 64.0
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-185 653.7 547 60.7
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.1e-184 650.6 525 61.1
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 2.8e-183 646.0 525 61.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.7e-183 645.6 509 63.3
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 4.8e-183 645.2 483 65.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 8.2e-183 644.4 496 64.9
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.2e-181 640.6 527 60.7
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.1e-178 629.8 498 63.7
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 3.3e-176 622.5 499 62.9
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.3e-176 622.5 418 73.2
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-175 620.2 531 59.7
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 5.3e-174 615.1 490 63.3
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 5.3e-174 615.1 508 59.6
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.6e-173 612.8 556 57.6
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-171 607.1 510 59.6
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 3.9e-169 599.0 491 60.9
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-168 597.4 507 58.0
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.4e-168 594.7 519 56.5
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 2.2e-167 593.2 473 62.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.1e-166 589.3 547 58.5
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 2.9e-164 582.8 518 55.4
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.2e-163 578.2 492 59.1
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 9.4e-163 577.8 486 60.1
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.4e-161 573.9 487 57.9
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-161 573.5 540 55.6
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-161 573.2 495 58.8
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.7e-160 568.5 384 71.4
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 5.3e-158 562.0 322 86.0
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 4.2e-155 552.4 513 53.0
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 7.2e-155 551.6 506 55.3
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.7e-151 540.4 496 55.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 8.2e-151 538.1 486 57.8
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.1e-150 534.6 401 68.1
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.2e-149 534.3 511 53.8
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.6e-149 533.9 452 58.2
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 4.7e-146 522.3 454 61.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.0e-146 521.5 538 53.9
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 8.3e-143 511.5 514 52.5
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 4.5e-141 505.8 502 56.0
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 4.5e-141 505.8 393 63.4
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.7e-140 503.8 489 54.6
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 3.8e-140 502.7 488 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 5.0e-140 502.3 527 47.6
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 6.5e-140 501.9 500 49.8
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 4.2e-139 499.2 479 54.3
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.2e-135 486.9 528 47.5
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.6e-133 480.7 456 51.5
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 5.0e-132 475.7 334 71.0
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.1e-130 470.3 395 58.2
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.3e-127 461.1 338 66.6
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.8e-121 440.7 293 72.0
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 2.0e-120 437.2 393 61.1
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 5.8e-120 435.6 330 65.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.7e-117 426.8 457 48.6
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 6.0e-117 425.6 336 64.9
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 7.1e-110 402.1 433 51.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 7.1e-110 402.1 641 37.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.1e-109 400.6 331 61.0
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.3e-108 397.9 413 52.3
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.6e-108 395.2 340 55.6
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.1e-102 378.3 329 59.3
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 6.9e-89 332.4 458 43.4
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.4e-86 323.9 239 61.1
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 3.0e-84 317.0 186 81.2
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.3e-81 306.2 230 59.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.9e-80 302.0 277 51.3
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.6e-75 286.2 346 45.1
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 9.0e-73 278.9 600 32.8
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-65 255.4 211 62.1
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 4.1e-65 253.4 157 74.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 5.3e-65 253.1 156 74.4
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 6.9e-65 252.7 257 52.5
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.0e-65 252.3 211 61.1
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.4e-62 245.0 169 67.5
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 7.2e-62 242.7 468 35.0
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 8.8e-60 235.7 148 74.3
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 5.3e-57 226.5 192 61.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 6.7e-52 209.5 140 72.9
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.3e-50 203.0 194 47.9
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-49 202.2 149 63.1
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.4e-44 185.3 148 60.8
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 8.2e-42 176.0 186 52.2
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.6e-40 171.8 153 54.9
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-39 167.9 170 47.1
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.8e-39 167.2 196 47.4
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-37 161.8 118 64.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.8e-34 151.0 140 57.9
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-31 142.1 107 60.7
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.3e-23 114.8 76 67.1
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-20 105.1 121 43.8
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 9.8e-19 99.4 74 71.6
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.8e-18 97.8 74 73.0
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 4.5e-16 90.5 66 59.1
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 2.9e-10 71.2 64 56.2


User provided reference genes

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