Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 0.0e+00 1598.2 826 100.0
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 3.6e-99 367.1 479 48.6
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 3.9e-93 347.1 411 51.6
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 1.7e-77 295.0 419 47.7
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 3.2e-71 274.2 473 41.0
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 1.3e-69 268.9 465 41.3
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 7.6e-65 253.1 417 42.9
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 3.3e-60 237.7 473 37.8
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 5.8e-57 226.9 476 37.4
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 4.3e-52 210.7 424 40.8
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 5.6e-52 210.3 426 40.1
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 5.4e-47 193.7 424 38.7
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 4.6e-38 164.1 418 33.7
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 6.3e-27 127.1 412 29.4
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 6.9e-26 123.6 613 27.2
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 9.0e-26 123.2 337 34.1
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 4.5e-25 120.9 365 30.7
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 3.2e-23 114.8 425 30.4
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 9.4e-23 113.2 385 31.9
Glyma.15G030050 Glycine max HOM05D008235 ORTHO05D009358 2.1e-22 112.1 130 56.2
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 4.6e-22 110.9 418 28.9
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 8.8e-21 106.7 433 29.6
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 2.8e-19 101.7 337 32.0
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 1.4e-18 99.4 383 29.2
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 3.1e-18 98.2 362 29.3
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 2.6e-17 95.1 442 27.6
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 2.5e-15 88.6 422 25.8
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 4.2e-15 87.8 150 39.3
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 1.2e-14 86.3 333 27.0
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 4.7e-14 84.3 461 26.5
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 3.3e-12 78.2 410 27.6
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 5.7e-12 77.4 436 29.1
Phvul.005G153000 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 7.4e-12 77.0 123 49.6
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 1.3e-11 76.3 114 44.7
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 1.7e-11 75.9 414 28.5
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 2.8e-11 75.1 351 28.5
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 4.8e-11 74.3 422 27.3
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.8e-11 74.3 390 27.2
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 8.2e-11 73.6 416 26.7
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.1e-10 73.2 415 26.5
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.1e-10 73.2 400 26.8
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 5.9e-09 67.4 327 26.3
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 5.9e-09 67.4 188 29.8
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 1.0e-08 66.6 377 25.5
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.0e-08 66.6 401 25.9
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 5.0e-08 64.3 316 25.3
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 1.5e-07 62.8 179 34.6
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 1.9e-07 62.4 153 34.6
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 1.9e-07 62.4 364 26.4
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 3.2e-07 61.6 326 25.2
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 5.5e-07 60.8 359 24.2
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 7.2e-07 60.5 66 42.4
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 7.2e-07 60.5 411 25.8
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 1.2e-06 59.7 166 29.5
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 1.2e-06 59.7 165 32.1
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 1.2e-06 59.7 319 26.0
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 2.1e-06 58.9 168 31.0
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 2.1e-06 58.9 168 31.0
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 2.1e-06 58.9 168 31.0
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 2.1e-06 58.9 150 32.0
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 3.6e-06 58.2 95 41.1
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 3.6e-06 58.2 95 41.1
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 4.7e-06 57.8 380 24.2
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.7e-06 57.8 51 49.0
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 6.1e-06 57.4 51 49.0


User provided reference genes

Program Settings