Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 5.9e-258 894.0 581 100.0
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 6.1e-61 239.6 669 39.3
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 1.1e-49 202.2 385 54.8
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 1.3e-47 195.3 760 32.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 7.5e-43 179.5 682 29.6
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.1e-41 175.6 405 39.8
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.8e-39 167.2 405 35.6
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 3.8e-39 167.2 387 48.1
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 5.0e-39 166.8 381 42.0
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 9.5e-38 162.5 404 33.4
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.4e-33 148.7 248 40.3
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.8e-33 148.3 431 33.6
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.6e-32 145.2 256 34.4
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.9e-31 141.0 196 48.0
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 3.3e-30 137.5 408 33.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.6e-30 136.7 409 31.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 8.0e-29 132.9 249 35.7
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 3.1e-28 131.0 184 41.3
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.0e-27 128.3 181 43.6
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.6e-27 127.9 253 33.2
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 4.4e-27 127.1 254 33.5
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 4.4e-27 127.1 156 44.2
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.8e-27 126.7 175 38.9
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 9.8e-27 125.9 257 33.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.9e-26 124.4 176 40.9
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.9e-26 124.4 261 32.2
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.9e-26 123.6 186 38.7
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 4.9e-26 123.6 254 32.3
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 6.4e-26 123.2 293 33.4
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 6.4e-26 123.2 255 32.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 8.3e-26 122.9 193 36.3
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.1e-25 122.5 182 40.7
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.4e-25 121.3 300 40.3
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 3.2e-25 120.9 177 40.7
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 3.2e-25 120.9 260 34.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 4.1e-25 120.6 182 39.6
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 7.0e-25 119.8 255 31.8
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 9.2e-25 119.4 179 42.5
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.2e-24 119.0 182 37.4
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.6e-24 118.6 257 29.6
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 3.5e-24 117.5 174 41.4
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 3.5e-24 117.5 183 36.6
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 3.0e-23 114.4 148 38.5
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 5.0e-23 113.6 255 32.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 8.6e-23 112.8 212 34.9
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 8.6e-23 112.8 257 32.7
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 2.5e-22 111.3 522 26.4
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 3.3e-22 110.9 515 26.4
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.3e-22 110.5 195 31.8
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.2e-21 109.0 257 33.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.6e-21 108.6 179 36.9
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 2.8e-21 107.8 275 31.6
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.8e-21 107.8 187 36.4
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.6e-21 107.5 257 32.3
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 4.7e-21 107.1 145 43.4
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 4.7e-21 107.1 269 29.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.1e-20 105.9 171 39.8
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.4e-20 105.5 568 23.9
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.4e-20 105.5 256 29.3
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.8e-20 105.1 244 29.5
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.3e-20 104.8 190 32.1
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 5.2e-20 103.6 210 35.7
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 6.8e-20 103.2 158 36.7
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 6.8e-20 103.2 124 38.7
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.9e-20 102.8 251 36.3
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.2e-19 102.4 254 36.2
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 2.0e-19 101.7 118 43.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.6e-19 101.3 192 32.3
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 4.4e-19 100.5 284 27.8
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.9e-18 97.8 208 31.7
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 3.7e-18 97.4 206 33.0
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 6.4e-18 96.7 117 41.0
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 8.3e-18 96.3 143 35.7
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 8.3e-18 96.3 172 32.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 2.4e-17 94.7 295 27.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.2e-17 94.4 174 37.9
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 5.4e-17 93.6 582 25.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-16 92.0 148 38.5
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.1e-16 91.7 122 37.7
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-16 91.7 163 36.2
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.1e-16 91.7 159 34.0
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 2.7e-16 91.3 166 37.3
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.5e-16 90.9 163 36.8
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 3.5e-16 90.9 191 35.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 3.5e-16 90.9 163 35.6
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.6e-16 90.5 113 38.9
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 4.6e-16 90.5 123 39.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 6.0e-16 90.1 173 34.1
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.0e-15 89.4 150 37.3
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.0e-15 89.4 186 33.3
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 1.0e-15 89.4 234 27.4
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.3e-15 89.0 163 36.8
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 2.3e-15 88.2 166 37.3
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 5.1e-15 87.0 126 34.9
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-14 85.9 165 33.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-14 85.9 164 34.1
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-14 85.9 164 34.1
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.9e-14 85.1 162 37.0
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.9e-14 85.1 184 33.2
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 3.3e-14 84.3 170 35.3
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 4.3e-14 84.0 72 50.0
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.3e-14 84.0 266 28.2
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 5.6e-14 83.6 171 34.5
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 9.5e-14 82.8 176 30.1
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 9.5e-14 82.8 165 34.5
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 9.5e-14 82.8 165 34.5
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 9.5e-14 82.8 169 32.5
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.6e-13 82.0 95 38.9
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.6e-13 82.0 95 38.9
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.1e-13 81.6 167 29.9
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.1e-13 81.6 167 29.9
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.1e-13 81.6 179 31.3
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 2.8e-13 81.3 168 32.1
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.6e-13 80.9 137 30.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 4.7e-13 80.5 157 35.0
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.7e-13 80.5 178 32.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-12 79.3 168 32.7
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.4e-12 79.0 87 43.7
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.4e-12 79.0 173 34.7
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 4.0e-12 77.4 74 47.3
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 6.8e-12 76.6 164 32.3
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 8.9e-12 76.3 199 31.7
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 8.9e-12 76.3 137 29.9
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.2e-11 75.9 61 52.5
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.2e-11 75.9 164 32.9
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 4.4e-11 73.9 156 33.3
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 5.8e-11 73.6 170 31.8
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.6e-11 73.2 71 42.3
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.6e-11 73.2 156 32.1
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 7.6e-11 73.2 146 37.7
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 1.7e-10 72.0 164 45.1
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 2.9e-10 71.2 153 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-10 70.1 142 28.9
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 8.3e-10 69.7 172 30.8
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 8.3e-10 69.7 103 35.9
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-09 68.6 169 30.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.1e-08 65.1 195 29.7
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 6.0e-08 63.5 142 26.8
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.0e-07 62.8 116 30.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-07 62.8 165 30.9
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.0e-07 61.2 85 37.6
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.1e-07 60.5 242 27.3
Medtr8g091840 Medicago truncatula HOM05D003739 ORTHO05D003996 5.1e-07 60.5 58 58.6
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 6.6e-07 60.1 62 45.2
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 6.6e-07 60.1 84 41.7
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-06 58.5 145 31.0
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 1.9e-06 58.5 56 48.2


User provided reference genes

Program Settings