Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 1.7e-179 632.5 303 100.0
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 4.6e-145 518.1 276 90.2
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 1.0e-144 516.9 270 90.7
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 1.3e-126 456.8 259 83.8
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 1.3e-123 446.8 274 78.5
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 1.7e-123 446.4 271 79.0
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 1.1e-122 443.7 271 78.2
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 2.1e-121 439.5 262 80.2
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 2.2e-118 429.5 264 77.3
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 2.6e-116 422.5 257 77.0
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 4.5e-116 421.8 261 75.5
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 5.0e-115 418.3 274 73.0
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 5.5e-114 414.8 268 72.4
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.6e-113 413.3 264 75.0
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 8.0e-113 411.0 278 69.4
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 1.4e-112 410.2 274 70.4
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 1.4e-112 410.2 261 73.6
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 1.8e-112 409.8 257 75.1
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 4.0e-112 408.7 273 71.4
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 4.0e-112 408.7 273 71.4
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 5.2e-112 408.3 273 71.1
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 7.5e-111 404.4 273 70.3
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 3.7e-110 402.1 261 73.2
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 4.8e-110 401.7 263 71.1
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 6.3e-110 401.4 257 73.5
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 1.1e-109 400.6 262 71.0
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 1.2e-108 397.1 268 70.9
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 1.2e-108 397.1 263 69.6
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 1.6e-108 396.7 268 70.5
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 5.9e-108 394.8 244 74.6
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 1.7e-107 393.3 261 70.9
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 2.2e-107 392.9 261 68.2
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 2.2e-107 392.9 261 68.2
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 2.9e-107 392.5 273 66.7
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 2.9e-107 392.5 262 70.6
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 8.5e-107 391.0 262 69.5
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 1.1e-106 390.6 262 70.6
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 4.2e-106 388.7 270 65.6
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 4.2e-106 388.7 261 69.0
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.6e-105 386.7 263 68.8
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 3.6e-105 385.6 270 65.9
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 4.7e-105 385.2 233 74.7
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 4.7e-105 385.2 272 67.3
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 3.0e-104 382.5 262 68.7
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 4.0e-104 382.1 271 65.7
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 4.0e-104 382.1 271 67.9
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 7.5e-103 377.9 248 69.8
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 1.3e-102 377.1 246 69.5
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 1.3e-102 377.1 248 69.4
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 2.8e-102 375.9 248 69.0
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 2.8e-102 375.9 272 63.2
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 4.8e-102 375.2 248 69.0
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.1e-101 374.0 267 65.5
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 1.1e-101 374.0 264 65.5
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 2.4e-101 372.9 246 69.1
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 7.0e-101 371.3 293 64.2
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 1.2e-100 370.5 284 63.7
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 2.0e-100 369.8 253 71.5
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 2.0e-100 369.8 267 66.3
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 1.0e-99 367.5 270 64.4
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 1.7e-99 366.7 275 62.5
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 2.9e-99 365.9 274 63.1
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 3.2e-98 362.5 259 64.1
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 5.5e-98 361.7 259 64.9
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 9.5e-98 360.9 269 63.6
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 1.2e-97 360.5 232 74.1
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 1.6e-97 360.1 275 61.8
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 1.6e-97 360.1 294 58.5
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 1.6e-97 360.1 259 63.7
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 4.7e-97 358.6 233 73.8
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 4.0e-96 355.5 263 63.1
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 2.0e-95 353.2 251 65.3
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 2.6e-95 352.8 251 64.1
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 3.5e-92 342.4 245 64.9
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 2.9e-91 339.3 263 63.9
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 4.3e-90 335.5 220 69.1
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 4.7e-89 332.0 282 60.3
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 1.2e-87 327.4 233 66.1
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.5e-87 327.0 235 67.7
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 4.4e-87 325.5 233 65.2
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 2.9e-86 322.8 234 60.3
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 6.4e-86 321.6 230 64.3
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 1.6e-81 307.0 198 69.2
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.5e-79 300.4 193 71.0
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 8.3e-78 294.7 234 60.7
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 2.4e-77 293.1 173 78.6
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 1.6e-76 290.4 186 76.9
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.6e-73 280.4 183 69.4
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 3.6e-73 279.3 234 56.0
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 3.4e-71 272.7 233 51.1
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 3.4e-71 272.7 234 50.0
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 5.4e-69 265.4 266 53.0
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 6.4e-62 241.9 152 75.7
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 5.6e-58 228.8 144 75.7
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 3.2e-53 213.0 135 68.9
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 1.1e-50 204.5 161 57.1
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.8e-49 199.9 138 69.6
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 3.6e-49 199.5 144 66.0
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.7e-46 190.7 131 70.2
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.7e-46 190.7 131 70.2
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.5e-44 183.0 129 62.0
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 1.3e-43 181.0 108 75.0
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 8.7e-43 178.3 154 57.8
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 1.3e-41 174.5 175 57.1
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 4.9e-38 162.5 150 56.7
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 3.1e-32 143.3 236 33.1
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 4.2e-29 132.9 105 61.9
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 6.0e-28 129.0 254 39.0
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 5.9e-23 112.5 108 51.9
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 2.2e-22 110.5 93 54.8
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 2.9e-22 110.2 60 76.7
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 2.2e-17 94.0 66 62.1
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.1e-16 91.7 60 75.0
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.7e-14 84.3 43 86.0
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.7e-14 84.3 43 86.0
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 4.7e-12 76.3 52 63.5
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 3.0e-11 73.6 146 30.1
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 9.7e-10 68.6 43 74.4
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 2.0e-07 60.8 40 70.0
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 2.0e-07 60.8 40 70.0
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 5.9e-07 59.3 50 54.0
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 1.7e-06 57.8 43 55.8
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 1.7e-06 57.8 43 55.8
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.7e-06 57.8 73 45.2
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.7e-06 57.8 89 40.4


User provided reference genes

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