Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 1.0e-143 513.5 265 100.0
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 1.2e-107 393.7 260 78.5
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.3e-100 369.4 248 76.2
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.3e-100 369.4 248 76.2
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 1.1e-86 323.9 249 69.5
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.9e-86 323.2 253 70.0
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 3.3e-86 322.4 257 70.0
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 3.3e-86 322.4 248 67.3
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 2.1e-85 319.7 255 67.8
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 2.1e-85 319.7 251 67.3
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 4.7e-85 318.5 267 68.5
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 8.9e-84 314.3 255 66.3
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 5.8e-83 311.6 248 66.9
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 7.5e-83 311.2 252 67.9
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.1e-81 307.4 266 65.8
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 1.1e-81 307.4 203 75.4
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.4e-81 307.0 264 65.2
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 5.4e-81 305.1 268 65.3
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 7.0e-81 304.7 257 66.5
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 9.2e-81 304.3 266 65.4
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 9.2e-81 304.3 266 65.0
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 7.8e-80 301.2 255 64.7
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 1.0e-79 300.8 249 68.7
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 2.3e-79 299.7 260 65.0
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.9e-79 298.9 268 64.2
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 3.9e-79 298.9 258 64.3
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 8.6e-79 297.7 248 64.9
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 2.5e-78 296.2 252 63.5
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 4.3e-78 295.4 256 64.1
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 5.6e-78 295.0 248 65.3
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 5.6e-78 295.0 248 65.3
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 7.3e-78 294.7 248 65.3
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 9.5e-78 294.3 248 64.5
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 9.5e-78 294.3 250 63.2
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.7e-77 292.0 260 63.1
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 6.2e-77 291.6 247 65.2
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 1.4e-76 290.4 254 66.5
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 4.0e-76 288.9 250 63.6
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 5.2e-76 288.5 245 63.7
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 8.9e-76 287.7 256 62.1
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 1.2e-75 287.3 260 61.2
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 3.4e-75 285.8 247 62.8
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.3e-74 283.9 256 61.3
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.7e-74 283.5 260 61.9
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 3.7e-74 282.3 254 63.0
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 8.3e-74 281.2 196 74.0
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 8.3e-74 281.2 221 66.5
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 1.4e-73 280.4 269 59.1
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 4.1e-73 278.9 246 61.4
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 7.0e-73 278.1 205 70.7
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 7.0e-73 278.1 246 62.2
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 7.0e-73 278.1 209 68.9
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.2e-72 277.3 246 62.2
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.2e-72 277.3 246 62.2
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 1.2e-72 277.3 200 70.0
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.1e-72 276.6 247 62.8
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 2.1e-72 276.6 189 73.0
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 2.7e-72 276.2 255 60.4
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 3.5e-72 275.8 251 60.6
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 6.0e-72 275.0 255 62.0
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 6.0e-72 275.0 255 62.0
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 6.0e-72 275.0 255 62.7
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 7.8e-72 274.6 254 60.2
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.0e-71 274.2 255 63.1
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 1.3e-71 273.9 195 72.3
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 2.3e-71 273.1 251 60.2
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 2.3e-71 273.1 255 60.4
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 3.0e-71 272.7 215 66.5
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 6.6e-71 271.6 248 61.7
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 8.6e-71 271.2 265 57.7
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.5e-70 270.4 245 61.2
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 3.6e-69 265.8 255 59.6
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 8.1e-69 264.6 258 59.3
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.4e-68 263.8 255 59.6
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.1e-68 262.7 202 62.9
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 3.1e-68 262.7 249 59.4
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 4.0e-68 262.3 229 61.1
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 5.2e-68 261.9 216 64.8
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 6.8e-68 261.5 250 57.2
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.0e-67 260.0 228 62.7
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 2.6e-67 259.6 177 71.8
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 4.9e-66 255.4 238 58.8
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 4.9e-66 255.4 238 59.2
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.9e-65 253.4 286 53.5
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 5.4e-65 251.9 269 54.3
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 7.1e-65 251.5 255 56.5
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.2e-64 250.8 276 52.2
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.6e-64 250.4 238 58.0
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.1e-64 250.0 271 53.9
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 3.5e-64 249.2 265 55.8
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 1.1e-62 244.2 268 53.0
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.1e-62 244.2 261 54.0
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 2.5e-62 243.0 204 63.2
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 2.5e-62 243.0 218 60.1
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 5.6e-62 241.9 249 57.4
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 9.5e-62 241.1 174 69.0
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 9.5e-62 241.1 200 62.5
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 2.1e-61 240.0 250 54.8
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 4.7e-61 238.8 236 59.3
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 1.1e-60 237.7 248 54.4
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 3.1e-60 236.1 248 55.6
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 8.9e-60 234.6 204 58.3
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 3.4e-59 232.6 206 62.6
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 7.6e-59 231.5 260 54.6
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 9.9e-59 231.1 158 74.1
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.4e-57 227.3 183 59.0
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.9e-54 216.9 141 77.3
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.4e-51 206.1 184 57.6
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 2.9e-50 203.0 261 48.7
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 6.4e-50 201.8 178 56.2
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.4e-41 174.1 182 53.8
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.5e-30 137.5 97 72.2
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 1.7e-26 124.0 99 66.7
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 5.3e-20 102.4 134 48.5
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 1.7e-18 97.4 70 67.1
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-15 87.8 122 45.9
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-15 87.0 123 38.2
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 9.7e-14 81.6 71 53.5
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.7e-10 70.9 55 67.3
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 4.4e-06 56.2 55 60.0
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 7.4e-06 55.5 100 39.0


User provided reference genes

Program Settings