Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 1.4e-50 202.6 99 100.0
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.6e-49 199.1 99 97.0
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 2.0e-49 198.7 99 96.0
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 6.5e-48 193.7 99 93.9
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 1.2e-46 189.5 99 90.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 1.2e-46 189.5 99 90.9
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 89.9
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 8.0e-46 186.8 99 88.9
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 1.4e-45 186.0 99 89.9
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 4.0e-45 184.5 99 87.9
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 5.2e-45 184.1 99 87.9
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 6.8e-45 183.7 99 87.9
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 5.7e-44 180.6 98 85.7
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 7.5e-44 180.3 99 86.9
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 7.5e-44 180.3 99 86.9
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 7.5e-44 180.3 99 86.9
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 7.5e-44 180.3 99 85.9
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 1.7e-43 179.1 112 79.5
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 1.7e-43 179.1 99 84.8
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.7e-43 179.1 99 84.8
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 1.7e-43 179.1 99 84.8
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 1.7e-43 179.1 99 84.8
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 2.8e-43 178.3 99 84.8
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 2.8e-43 178.3 99 84.8
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 83.8
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 84.8
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 83.8
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 4.8e-43 177.6 99 84.8
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 6.3e-43 177.2 99 84.8
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 8.3e-43 176.8 99 84.8
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 8.3e-43 176.8 99 83.8
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 8.3e-43 176.8 99 83.8
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 1.1e-42 176.4 99 83.8
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 1.1e-42 176.4 99 85.9
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 1.1e-42 176.4 99 83.8
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.8e-42 175.6 99 82.8
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 3.1e-42 174.9 99 83.8
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 3.1e-42 174.9 99 83.8
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 4.1e-42 174.5 99 81.8
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 4.1e-42 174.5 99 82.8
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 83.8
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 5.4e-42 174.1 97 85.6
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 82.8
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 5.4e-42 174.1 99 83.8
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 7.0e-42 173.7 99 81.8
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 7.0e-42 173.7 99 82.8
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 7.0e-42 173.7 99 83.8
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 9.1e-42 173.3 99 81.8
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 1.2e-41 172.9 99 82.8
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 83.8
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 84.8
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 84.8
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 84.8
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 84.8
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 82.8
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 2.0e-41 172.2 99 81.8
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 2.7e-41 171.8 99 81.8
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 2.7e-41 171.8 99 83.8
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 7.7e-41 170.2 99 83.8
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 1.0e-40 169.9 99 80.8
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.7e-40 169.1 99 79.8
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 1.7e-40 169.1 99 81.8
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 2.3e-40 168.7 99 80.8
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 2.9e-40 168.3 106 78.3
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 5.0e-40 167.5 99 79.8
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 2.5e-39 165.2 99 78.8
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 2.5e-39 165.2 99 78.8
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 1.6e-38 162.5 99 76.8
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.6e-38 162.5 99 77.8
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 1.4e-37 159.5 99 74.7
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 5.2e-37 157.5 99 74.7
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 5.2e-37 157.5 99 74.7
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 6.8e-37 157.1 99 73.7
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 6.8e-37 157.1 95 77.9
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 1.2e-36 156.4 95 76.8
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 1.5e-36 156.0 95 76.8
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 1.5e-36 156.0 95 76.8
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 2.0e-36 155.6 95 76.8
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 2.0e-36 155.6 95 76.8
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 2.0e-36 155.6 95 76.8
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 2.0e-36 155.6 95 76.8
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 2.0e-36 155.6 88 83.0
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 2.0e-36 155.6 95 76.8
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 2.6e-36 155.2 95 75.8
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 2.6e-36 155.2 95 75.8
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 2.6e-36 155.2 95 75.8
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 2.6e-36 155.2 95 75.8
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 2.6e-36 155.2 95 75.8
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 2.6e-36 155.2 99 71.7
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 5.7e-36 154.1 99 70.7
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 3.7e-35 151.4 95 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 1.4e-34 149.4 99 69.7
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 1.4e-34 149.4 142 57.7
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 1.8e-34 149.1 75 93.3
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 4.1e-34 147.9 99 65.7
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 5.4e-34 147.5 150 54.7
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 4.5e-33 144.4 72 95.8
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 7.8e-33 143.7 87 74.7
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 7.8e-33 143.7 94 74.5
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.7e-32 142.5 98 64.3
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 5.6e-31 137.5 72 88.9
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.0e-29 133.3 99 68.7
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 3.0e-29 131.7 72 84.7
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 8.9e-29 130.2 150 48.7
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 8.9e-29 130.2 86 72.1
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 8.9e-29 130.2 72 83.3
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 1.2e-28 129.8 73 83.6
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 1.5e-28 129.4 73 80.8
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 2.0e-28 129.0 75 80.0
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 3.4e-28 128.3 76 77.6
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 7.5e-28 127.1 100 61.0
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 7.5e-28 127.1 72 80.6
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 2.7e-25 118.6 99 57.6
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.7e-24 115.9 74 71.6
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 3.0e-24 115.2 92 57.6
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.9e-24 114.8 73 72.6
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 5.0e-24 114.4 62 82.3
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 8.6e-24 113.6 72 72.2
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 3.3e-23 111.7 61 83.6
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 5.6e-23 110.9 69 71.0
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 8.0e-22 107.1 94 54.3
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.4e-21 106.3 75 68.0
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 1.2e-20 103.2 62 82.3
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 4.4e-20 101.3 58 77.6
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.7e-19 99.4 91 58.2
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 9.2e-18 93.6 93 49.5
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 1.5e-12 76.3 42 81.0
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 6.4e-11 70.9 37 94.6
Pp3c1_36090 Physcomitrium patens HOM05D000212 ORTHO05D000225 8.6e-08 60.5 109 34.9
TWI09G0972 Tripterygium wilfordii HOM05D000212 ORTHO05D000225 4.3e-07 58.2 110 31.8
CBR_g21767 Chara braunii HOM05D000212 ORTHO05D000225 5.6e-07 57.8 111 34.2
PRCOL_00006505 Prasinoderma coloniale HOM05D000212 ORTHO05D000225 5.6e-07 57.8 107 34.6
MBI05_g23376_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D000225 1.6e-06 56.2 106 34.9
SEGI_37577 Sequoiadendron giganteum HOM05D000212 ORTHO05D000225 2.1e-06 55.8 112 34.8
MBI16_g07772_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D000225 2.8e-06 55.5 100 33.0
SMO172G0009 Selaginella moellendorffii HOM05D000212 ORTHO05D000225 2.8e-06 55.5 107 35.5
COL.COLO4_26111 Corchorus olitorius HOM05D000212 ORTHO05D000225 4.7e-06 54.7 105 32.4
CsaV3_3G000620 Cucumis sativus L. HOM05D000212 ORTHO05D000225 6.2e-06 54.3 108 34.3
MCO13G495 Micromonas commoda HOM05D000212 ORTHO05D000225 6.2e-06 54.3 102 35.3
Sed0001994 Sechium edule HOM05D000212 ORTHO05D000225 6.2e-06 54.3 110 33.6


User provided reference genes

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